CuGenDBv2

Gene ID	PI0002686
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	chr02:16760237..16762113
RNA-Seq Expression	PI0002686
Synteny	PI0002686
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037432.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

7.7e-60

82.31

Show/hide

Query:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK
        S+GNTSKAL DIGKRPNTRSRSRE QSSED+PPFE+AKNIWE +SKPPKGGI+IKE+H IDEH SSS+ SSEEMPHPNI+SVMVTNVDTSE+RMA+LEKK
Subjt:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK

Query:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ
        VNML+K VEERDYEIA L+NHIESRDAAESSH +T KN DKGKA++Q
Subjt:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ

KAA0039098.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.6e-60

82.99

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Query:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK
        S+GNTSKAL DIGKRPNTRSRSRE QSSED+PPFE+AKNIWE +SKPPKGGI+IKE+H IDEH SSS+ SSEEMPHPNIMSVMVTNVDTSE+RMA+LEKK
Subjt:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK

Query:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ
        VNML+K VEERDYEIA L+NHIESRDAAESSH +T KN DKGKA++Q
Subjt:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ

KAA0056121.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.5e-60

82.99

Show/hide

Query:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK
        S+GNTSKAL DIGKRPNTRSRSRE QSSED+PPFE+AKNIWE +SKPPKGGI+IKE+H IDEH SSS+ SSEEMPHPNIMSVMVTNVDTSE+RMA+LEKK
Subjt:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK

Query:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ
        VNML+K VEERDYEIA L+NHIESRDAAESSH +T KN DKGKA++Q
Subjt:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ

KAA0065303.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.0e-59

82.31

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Query:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK
        S+GNTSKAL DIGKRPNTRSRSRE QSSED+PPFE+AKNIWE +SKPPKGGI+IKE+H IDEH SSS+ SSEEMPHPNIMSVMV NVDTSE+RMA+LEKK
Subjt:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK

Query:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ
        VNML+K VEERDYEIA L+NHIESRDAAESSH +T KN DKGKA++Q
Subjt:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ

TYK14887.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.6e-60

82.99

Show/hide

Query:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK
        S+GNTSKAL DIGKRPNTRSRSRE QSSED+PPFE+AKNIWE +SKPPKGGI+IKE+H IDEH SSS+ SSEEMPHPNIMSVMVTNVDTSE+RMA+LEKK
Subjt:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK

Query:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ
        VNML+K VEERDYEIA L+NHIESRDAAESSH +T KN DKGKA++Q
Subjt:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1V3 Ty3-gypsy retrotransposon protein

3.7e-60

82.31

Show/hide

Query:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK
        S+GNTSKAL DIGKRPNTRSRSRE QSSED+PPFE+AKNIWE +SKPPKGGI+IKE+H IDEH SSS+ SSEEMPHPNI+SVMVTNVDTSE+RMA+LEKK
Subjt:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK

Query:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ
        VNML+K VEERDYEIA L+NHIESRDAAESSH +T KN DKGKA++Q
Subjt:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ

A0A5A7T892 Ty3-gypsy retrotransposon protein

1.3e-60

82.99

Show/hide

Query:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK
        S+GNTSKAL DIGKRPNTRSRSRE QSSED+PPFE+AKNIWE +SKPPKGGI+IKE+H IDEH SSS+ SSEEMPHPNIMSVMVTNVDTSE+RMA+LEKK
Subjt:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK

Query:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ
        VNML+K VEERDYEIA L+NHIESRDAAESSH +T KN DKGKA++Q
Subjt:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ

A0A5A7URH1 Ty3-gypsy retrotransposon protein

1.7e-60

82.99

Show/hide

Query:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK
        S+GNTSKAL DIGKRPNTRSRSRE QSSED+PPFE+AKNIWE +SKPPKGGI+IKE+H IDEH SSS+ SSEEMPHPNIMSVMVTNVDTSE+RMA+LEKK
Subjt:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK

Query:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ
        VNML+K VEERDYEIA L+NHIESRDAAESSH +T KN DKGKA++Q
Subjt:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ

A0A5A7VAV4 Retrotransposon gag protein

4.9e-60

82.31

Show/hide

Query:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK
        S+GNTSKAL DIGKRPNTRSRSRE QSSED+PPFE+AKNIWE +SKPPKGGI+IKE+H IDEH SSS+ SSEEMPHPNIMSVMV NVDTSE+RMA+LEKK
Subjt:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK

Query:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ
        VNML+K VEERDYEIA L+NHIESRDAAESSH +T KN DKGKA++Q
Subjt:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ

A0A5D3CSH0 Ty3-gypsy retrotransposon protein

1.3e-60

82.99

Show/hide

Query:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK
        S+GNTSKAL DIGKRPNTRSRSRE QSSED+PPFE+AKNIWE +SKPPKGGI+IKE+H IDEH SSS+ SSEEMPHPNIMSVMVTNVDTSE+RMA+LEKK
Subjt:  SRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKK

Query:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ
        VNML+K VEERDYEIA L+NHIESRDAAESSH +T KN DKGKA++Q
Subjt:  VNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCTAGAGGCAACACTTCCAAAGCTCTAGGCGACATCGGTAAAAGGCCAAATACTCGCAGCCGCTCAAGGGAGGCCCAATCGTCTGAGGATTTGCCACCATTTGAGAT
CGCAAAGAATATCTGGGAAATGTTGTCAAAACCACCAAAAGGTGGAATTATAATAAAGGAAAGTCATGTGATTGATGAGCACGGTTCGTCCTCTGAACGTTCAAGTGAGG
AGATGCCTCACCCAAATATAATGTCGGTTATGGTGACTAACGTTGATACAAGTGAGGATAGAATGGCGAAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAGTTGAA
GAAAGGGATTATGAGATTGCATCCCTGAGAAATCACATTGAAAGTCGTGACGCTGCTGAATCAAGTCACACATATACCACCAAGAATAAGGACAAAGGGAAGGCAATTTT
GCAGAATCCTGCTTGTACCGAGAGTATAAAAGAAAGGATAAGTCTTAGAGAAGAAAAGCAAGGAAGAATGCAAGGAAGTTTCAACCAATCACCGAAGAAGGTGAGGAGCT
TCCTCGACCACGACAACCAATAA

mRNA sequence

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Protein sequence

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MSRGNTSKALGDIGKRPNTRSRSREAQSSEDLPPFEIAKNIWEMLSKPPKGGIIIKESHVIDEHGSSSERSSEEMPHPNIMSVMVTNVDTSEDRMAKLEKKVNMLLKAVE
ERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQNPACTESIKERISLREEKQGRMQGSFNQSPKKVRSFLDHDNQ

PI0002686 (gene) of Melon (PI 482460) v1 genome