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PI0002702 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002702
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionSplicing factor subunit
Genome locationchr04:1512831..1514901
RNA-Seq ExpressionPI0002702
SyntenyPI0002702
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005686 - U2 snRNP (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
InterPro domainsIPR009846 - Splicing factor 3B subunit 5/RDS3 complex subunit 10
IPR017089 - Splicing factor 3B, subunit 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134645.1 uncharacterized protein At4g14342 [Cucumis sativus]1.8e-4398.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGH+PILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

XP_015887858.1 uncharacterized protein At4g14342 [Ziziphus jujuba]2.3e-4397.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGH+PILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

XP_021593515.1 uncharacterized protein At4g14342 [Manihot esculenta]3.0e-4396.55Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GH+PILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

XP_031271203.1 uncharacterized protein At4g14342 isoform X1 [Pistacia vera]2.3e-4397.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGH+PILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

XP_038719409.1 uncharacterized protein At4g14342 [Tripterygium wilfordii]3.0e-4396.55Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGH+P+LAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

TrEMBL top hitse value%identityAlignment
A0A0A0KKG4 Splicing factor subunit8.5e-4498.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGH+PILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

A0A1S3AZE4 Splicing factor subunit8.5e-4498.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGH+PILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

A0A5A7UDP6 Splicing factor subunit8.5e-4498.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGH+PILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

A0A6J1IBJ4 Splicing factor subunit1.1e-4397.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGH+PILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

E5GC24 Splicing factor subunit8.5e-4498.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGH+PILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

SwissProt top hitse value%identityAlignment
P58728 Uncharacterized protein At4g143426.3e-4490.8Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GH+P+L+YFA+AENESIGRERYNFMQKMLLPCGLPPERE++
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

Q56K13 Splicing factor 3B subunit 54.1e-2760.71Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GHF +L YFA+AENES  R R+N M+KML PCG P ++ ++
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

Q9BWJ5 Splicing factor 3B subunit 54.1e-2760.71Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GHF +L YFA+AENES  R R+N M+KML PCG P ++ ++
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

Q9LW64 Uncharacterized protein At3g233256.3e-4490.8Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GH+P+L+YFA+AENESIGRERYNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

Q9VHI4 Splicing factor 3B subunit 56.3e-2863.86Show/hide
Query:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GH+ IL YFA+AENES  R R+N M++ML PCG PPE+ +D
Subjt:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

Arabidopsis top hitse value%identityAlignment
AT3G23325.1 Splicing factor 3B subunit 5/RDS3 complex subunit 104.5e-4590.8Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GH+P+L+YFA+AENESIGRERYNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

AT4G14342.1 Splicing factor 3B subunit 5/RDS3 complex subunit 104.5e-4590.8Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GH+P+L+YFA+AENESIGRERYNFMQKMLLPCGLPPERE++
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCCAGTGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACCGGGCATGCCGACTTAAACAGATTTGAGTGGGCAGTGAACAT
TCAGCGTGATAGCTATGCATCTTATGTTGGACATTTCCCCATTCTAGCATATTTCGCTGTTGCTGAAAATGAATCTATTGGGAGGGAACGCTATAACTTTATGCAGAAAA
TGTTACTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA
mRNA sequenceShow/hide mRNA sequence
AATAAATCTTAGTCCATTCTTTTTTCACTCGATAAAATAATCATAATATTATTATTAAAAAACCATATGGACTCTCAAATTTTTGTTCATCGTTTATGCTTTTGGGGTTT
GACTAAAAGAAATTGTTAGGGGTGGGTTTTTCTTGAAACCCTAAATTGCAGGTAGTGGACTGTGCTGGACCTTTCGCTCGCCTGCCTTCTCTGCTCGTCGCGCCTATTGC
AATTTGCGAGTGAACATGCAGGCCAGTGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACCGGGCATGCCGACTTAAACAGATTTGA
GTGGGCAGTGAACATTCAGCGTGATAGCTATGCATCTTATGTTGGACATTTCCCCATTCTAGCATATTTCGCTGTTGCTGAAAATGAATCTATTGGGAGGGAACGCTATA
ACTTTATGCAGAAAATGTTACTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGAGATTGTTATCATTAAATAATTTAAGTTGTAGTTAAGATTGCGAATGATAAG
ACAAAGACATTATAGGGTTAATGAATTTCTTCTTTATGAACCAACGATGTGTTTGGATGGTAGGAAGTGTTCGATTCATTTTCCCATGTTCCGGTCATGTAAGAATTAGT
TTACGCATTCCGAGGTACTATTTCCTCGATCTCGTCCTTTTTGTTATAAGAACAAGGTCCATTTCATTCATAGTTTATAAAATTGTTTGTAAACTATAATTACATATAAT
AGTTGTTGGCCCCGTATTTGCATGGACTAAAATAATTAAGAAATGGAAGTTTTCATTCGTTAA
Protein sequenceShow/hide protein sequence
MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHFPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD