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PI0002711 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002711
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr07:12966000..12966637
RNA-Seq ExpressionPI0002711
SyntenyPI0002711
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADJ18449.1 gag/pol protein, partial [Bryonia dioica]1.1e-5981.94Show/hide
Query:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV
        +LVVDD+R VLTEECPQA A NANR V EAY++W+KAN+ ARVYILASM+DVLAKK++S+ATAK IM SLRE+FGQPSWSLRHEAIK+IYTKRMKEGTSV
Subjt:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV

Query:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN
        REHVLDMMMHFNI EVNGG IDEANQVSFILQ+LPK F+PFQ N
Subjt:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN

KAA0041460.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-5880.56Show/hide
Query:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV
        +LVVDD+R VLTEECP+   SNANR   +AY++WIKANE ARVYILASMSDVLAKK+ESLATAKEIM+SL+ +FGQP WSLRHEAIKYIYTKRMKEGTS+
Subjt:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV

Query:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN
        REHVLDMM+HFNIVEVNGG IDEANQVS IL++LPK FIPFQ N
Subjt:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN

KAA0048103.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-5881.25Show/hide
Query:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV
        +LVVDD+R VLTEECPQ  ASNANR   EAY++WIKANE ARVYILASMSDVLAKK+ESLATAKEIM SL+ +FGQP WSLRH+AIKYIYTKRMKEGTS+
Subjt:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV

Query:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN
        REHVL MM+HFNI EVNGG IDEANQVSFIL++LPK FIPFQ N
Subjt:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN

TYJ96447.1 gag/pol protein [Cucumis melo var. makuwa]7.6e-5879.86Show/hide
Query:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV
        +LVVDD+R VLTEECPQ LASNANR   EAY++WIKANE ARVYIL+SMSDVLAKK+ESLATAKEIM SL+ +FGQP WSLRH+AIKYIYTK+MKEGTS+
Subjt:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV

Query:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN
        REHVL MM+HFNI EVNGG IDEANQVSFIL++LPK FIPF+ N
Subjt:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN

XP_038891685.1 uncharacterized protein LOC120081079 [Benincasa hispida]5.8e-5881.25Show/hide
Query:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV
        +L+VDD+R VL+EECPQA ASNANR V EAY++W+KANE A VYILASMSDVLAKK+ESLATAKEI+ SLRE+FGQ SWSLRHEAIK+IYTKRMKEGTSV
Subjt:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV

Query:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN
        REHVLDMMM+FNI +VNGG IDEANQVSFILQ+LPK FIPF+ N
Subjt:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN

TrEMBL top hitse value%identityAlignment
A0A5A7TWX1 Gag/pol protein1.3e-5881.25Show/hide
Query:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV
        +LVVDD+R VLTEECPQ  ASNANR   EAY++WIKANE ARVYILASMSDVLAKK+ESLATAKEIM SL+ +FGQP WSLRH+AIKYIYTKRMKEGTS+
Subjt:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV

Query:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN
        REHVL MM+HFNI EVNGG IDEANQVSFIL++LPK FIPFQ N
Subjt:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN

A0A5A7US12 Gag/pol protein3.1e-5779.86Show/hide
Query:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV
        +LVVDD+R +LTEECPQ  ASN N+   +AY++WIKANE ARVYILASMSDVLAKK+ESLATAKEIM SL+ +F QP W LRHEAIKYIYTKRMKEGTSV
Subjt:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV

Query:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN
        REHVLDMMMHFNI EVNGG IDEANQVSFIL++LPK FIPFQ N
Subjt:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN

A0A5D3BBF3 Gag/pol protein3.7e-5879.86Show/hide
Query:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV
        +LVVDD+R VLTEECPQ LASNANR   EAY++WIKANE ARVYIL+SMSDVLAKK+ESLATAKEIM SL+ +FGQP WSLRH+AIKYIYTK+MKEGTS+
Subjt:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV

Query:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN
        REHVL MM+HFNI EVNGG IDEANQVSFIL++LPK FIPF+ N
Subjt:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN

A0A5D3DL59 Gag/pol protein7.4e-5980.56Show/hide
Query:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV
        +LVVDD+R VLTEECP+   SNANR   +AY++WIKANE ARVYILASMSDVLAKK+ESLATAKEIM+SL+ +FGQP WSLRHEAIKYIYTKRMKEGTS+
Subjt:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV

Query:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN
        REHVLDMM+HFNIVEVNGG IDEANQVS IL++LPK FIPFQ N
Subjt:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN

E2GK51 Gag/pol protein (Fragment)5.1e-6081.94Show/hide
Query:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV
        +LVVDD+R VLTEECPQA A NANR V EAY++W+KAN+ ARVYILASM+DVLAKK++S+ATAK IM SLRE+FGQPSWSLRHEAIK+IYTKRMKEGTSV
Subjt:  MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSV

Query:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN
        REHVLDMMMHFNI EVNGG IDEANQVSFILQ+LPK F+PFQ N
Subjt:  REHVLDMMMHFNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGTCGTAGATGATATAAGGTTGGTGTTAACTGAGGAATGTCCTCAAGCCCTGGCCTCAAATGCTAACCGAAATGTTTGGGAAGCATATAATCAATGGATTAAGGC
CAATGAAAATGCCCGTGTCTATATTCTTGCCAGCATGTCTGATGTTTTGGCAAAGAAATATGAATCCTTAGCTACGGCTAAAGAGATTATGCATTCATTGAGGGAAATTT
TTGGTCAGCCTTCATGGTCCCTCAGACACGAAGCAATTAAGTATATTTACACTAAGCGAATGAAGGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGATGCAC
TTCAATATCGTTGAAGTAAATGGTGGTCTCATTGATGAGGCAAATCAGGTGAGCTTTATTTTACAAACTCTTCCGAAGTGTTTTATACCATTTCAAAAGAACGGAGTTCA
CTTTAACCACCCTTTTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGTCGTAGATGATATAAGGTTGGTGTTAACTGAGGAATGTCCTCAAGCCCTGGCCTCAAATGCTAACCGAAATGTTTGGGAAGCATATAATCAATGGATTAAGGC
CAATGAAAATGCCCGTGTCTATATTCTTGCCAGCATGTCTGATGTTTTGGCAAAGAAATATGAATCCTTAGCTACGGCTAAAGAGATTATGCATTCATTGAGGGAAATTT
TTGGTCAGCCTTCATGGTCCCTCAGACACGAAGCAATTAAGTATATTTACACTAAGCGAATGAAGGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGATGCAC
TTCAATATCGTTGAAGTAAATGGTGGTCTCATTGATGAGGCAAATCAGGTGAGCTTTATTTTACAAACTCTTCCGAAGTGTTTTATACCATTTCAAAAGAACGGAGTTCA
CTTTAACCACCCTTTTGAATGA
Protein sequenceShow/hide protein sequence
MLVVDDIRLVLTEECPQALASNANRNVWEAYNQWIKANENARVYILASMSDVLAKKYESLATAKEIMHSLREIFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMH
FNIVEVNGGLIDEANQVSFILQTLPKCFIPFQKNGVHFNHPFE