; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0002722 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002722
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:5798027..5802004
RNA-Seq ExpressionPI0002722
SyntenyPI0002722
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061315.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-6152.29Show/hide
Query:  NLDREAMGQVREKTLRELSEPDEDQRPL--------------------------------------------------------------CIGGSVKVAK
        NL RE MG+VREKTL+EL+EP+EDQRPL                                                               +G  +KV K
Subjt:  NLDREAMGQVREKTLRELSEPDEDQRPL--------------------------------------------------------------CIGGSVKVAK

Query:  CGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMKQQMSHLTNAISKLE
        CGVCGLVGH NDKCP+++E  N++R+YDPH NTYN+ WRDNPNLRWGNDNQ+ + A S+S+ Q TNLED++K LATNT+SFQ EMKQQM+ LT   SK++
Subjt:  CGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMKQQMSHLTNAISKLE

Query:  GKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS
        GKGKL AQP HANVS ISLRSGKIL+TP+S EKKVTS P+ L +K+E KEEK+ET+  PS+S
Subjt:  GKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS

KAA0062400.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-6150.72Show/hide
Query:  NLDREAMGQVREKTLRELSEPDEDQRPLCI----------------------------------------------------------------------
        NL R  MG+VREKTLREL+EPDEDQRPLCI                                                                      
Subjt:  NLDREAMGQVREKTLRELSEPDEDQRPLCI----------------------------------------------------------------------

Query:  ------GGSVKVAKCGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMK
              G  +KV KCGVCGLVGH NDKC +++E  N++R+Y+PH NTYN+ WR+ PNLRWGNDNQ+ +QA  +S+NQ TNLED++K LATNT+SFQ EMK
Subjt:  ------GGSVKVAKCGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMK

Query:  QQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS
        QQM+ LT AISK++GKGKL AQPDHANVSAISLRSGKIL+TP++ EKKVTS P+ L +K+E KEEK+ET+  PS+S
Subjt:  QQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-5970.59Show/hide
Query:  GGSVKVAKCGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMKQQMSHL
        G  +KV KCGVCGLVGHLN+KCP+++E  N++R+YDPHSNTYN+ WRDNPNLRWGNDNQ+ +QA S+S+NQ TNLED++K LATNT+SFQ EMKQQM+ L
Subjt:  GGSVKVAKCGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMKQQMSHL

Query:  TNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS
        T AISK++GKGKL AQ DHANVSAISLRSGKIL+TP++ EKKVTS P+ L +K+E KEEK+ET+  PS+S
Subjt:  TNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS

TYK26581.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-6150.72Show/hide
Query:  NLDREAMGQVREKTLRELSEPDEDQRPLCI----------------------------------------------------------------------
        NL R  MG+VREKTLREL+EPDEDQRPLCI                                                                      
Subjt:  NLDREAMGQVREKTLRELSEPDEDQRPLCI----------------------------------------------------------------------

Query:  ------GGSVKVAKCGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMK
              G  +KV KCGVCGLVGH NDKC +++E  N++R+Y+PH NTYN+ WR+ PNLRWGNDNQ+ +QA  +S+NQ TNLED++K LATNT+SFQ EMK
Subjt:  ------GGSVKVAKCGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMK

Query:  QQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS
        QQM+ LT AISK++GKGKL AQPDHANVSAISLRSGKIL+TP++ EKKVTS P+ L +K+E KEEK+ET+  PS+S
Subjt:  QQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]8.7e-5868.82Show/hide
Query:  GGSVKVAKCGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMKQQMSHL
        G  +KV KCGVCGLVGH NDKCP+++E  N+++KYDPH NTYN+ WRDNPNLRWGNDNQ+ +QA  +S+NQ TNLED++K LATNT+SFQ EMKQQM+ L
Subjt:  GGSVKVAKCGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMKQQMSHL

Query:  TNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS
        T  ISK++GKGKLLAQPDHANVS ISLRS KIL+TP++ EKKVTS P+ L +K+E KEEK ET+  PS+S
Subjt:  TNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS

TrEMBL top hitse value%identityAlignment
A0A5A7V594 Retrotransposon gag protein8.2e-6250.72Show/hide
Query:  NLDREAMGQVREKTLRELSEPDEDQRPLCI----------------------------------------------------------------------
        NL R  MG+VREKTLREL+EPDEDQRPLCI                                                                      
Subjt:  NLDREAMGQVREKTLRELSEPDEDQRPLCI----------------------------------------------------------------------

Query:  ------GGSVKVAKCGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMK
              G  +KV KCGVCGLVGH NDKC +++E  N++R+Y+PH NTYN+ WR+ PNLRWGNDNQ+ +QA  +S+NQ TNLED++K LATNT+SFQ EMK
Subjt:  ------GGSVKVAKCGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMK

Query:  QQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS
        QQM+ LT AISK++GKGKL AQPDHANVSAISLRSGKIL+TP++ EKKVTS P+ L +K+E KEEK+ET+  PS+S
Subjt:  QQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS

A0A5A7V668 Retrotransposon gag protein1.1e-6152.29Show/hide
Query:  NLDREAMGQVREKTLRELSEPDEDQRPL--------------------------------------------------------------CIGGSVKVAK
        NL RE MG+VREKTL+EL+EP+EDQRPL                                                               +G  +KV K
Subjt:  NLDREAMGQVREKTLRELSEPDEDQRPL--------------------------------------------------------------CIGGSVKVAK

Query:  CGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMKQQMSHLTNAISKLE
        CGVCGLVGH NDKCP+++E  N++R+YDPH NTYN+ WRDNPNLRWGNDNQ+ + A S+S+ Q TNLED++K LATNT+SFQ EMKQQM+ LT   SK++
Subjt:  CGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMKQQMSHLTNAISKLE

Query:  GKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS
        GKGKL AQP HANVS ISLRSGKIL+TP+S EKKVTS P+ L +K+E KEEK+ET+  PS+S
Subjt:  GKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS

A0A5A7VQ60 Retrotransposon gag protein5.9e-6070.59Show/hide
Query:  GGSVKVAKCGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMKQQMSHL
        G  +KV KCGVCGLVGHLN+KCP+++E  N++R+YDPHSNTYN+ WRDNPNLRWGNDNQ+ +QA S+S+NQ TNLED++K LATNT+SFQ EMKQQM+ L
Subjt:  GGSVKVAKCGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMKQQMSHL

Query:  TNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS
        T AISK++GKGKL AQ DHANVSAISLRSGKIL+TP++ EKKVTS P+ L +K+E KEEK+ET+  PS+S
Subjt:  TNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS

A0A5D3DCG3 Retrotransposon gag protein4.2e-5868.82Show/hide
Query:  GGSVKVAKCGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMKQQMSHL
        G  +KV KCGVCGLVGH NDKCP+++E  N+++KYDPH NTYN+ WRDNPNLRWGNDNQ+ +QA  +S+NQ TNLED++K LATNT+SFQ EMKQQM+ L
Subjt:  GGSVKVAKCGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMKQQMSHL

Query:  TNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS
        T  ISK++GKGKLLAQPDHANVS ISLRS KIL+TP++ EKKVTS P+ L +K+E KEEK ET+  PS+S
Subjt:  TNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS

A0A5D3DS57 Retrotransposon gag protein8.2e-6250.72Show/hide
Query:  NLDREAMGQVREKTLRELSEPDEDQRPLCI----------------------------------------------------------------------
        NL R  MG+VREKTLREL+EPDEDQRPLCI                                                                      
Subjt:  NLDREAMGQVREKTLRELSEPDEDQRPLCI----------------------------------------------------------------------

Query:  ------GGSVKVAKCGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMK
              G  +KV KCGVCGLVGH NDKC +++E  N++R+Y+PH NTYN+ WR+ PNLRWGNDNQ+ +QA  +S+NQ TNLED++K LATNT+SFQ EMK
Subjt:  ------GGSVKVAKCGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPNLRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMK

Query:  QQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS
        QQM+ LT AISK++GKGKL AQPDHANVSAISLRSGKIL+TP++ EKKVTS P+ L +K+E KEEK+ET+  PS+S
Subjt:  QQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EKKVTSTPILLENKDEKKEEKLETSSLPSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTTAGCGGTTATAACAGACTTCATGCGAGCTGATGACCGCGATGCATCTTGCGATCTGAGCAGGCTTGAGCTAAAAAACCAAAACCTTGATAGAGAAGCCATGGG
GCAAGTTAGGGAGAAAACCTTAAGAGAGCTTTCCGAGCCTGACGAGGACCAAAGGCCCCTATGTATTGGTGGATCTGTTAAAGTTGCAAAGTGTGGGGTGTGCGGTCTAG
TCGGACATCTAAATGACAAGTGCCCTGACTTAGTGGAAAAGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGCCCGTTGGAGAGACAACCCCAAT
CTGAGATGGGGAAACGACAACCAAAGACCCTCGCAAGCAACTTCCTCTTCAAACAATCAAGATACTAATTTGGAAGATTTAGTTAAAACTCTTGCTACTAATACTATCTC
TTTTCAGAATGAAATGAAGCAACAAATGTCTCATCTAACAAATGCCATAAGCAAATTAGAAGGTAAAGGAAAACTTCTGGCTCAGCCTGATCATGCCAACGTTAGTGCCA
TCTCGCTTAGAAGCGGTAAGATTCTGGAAACCCCTTCAAGCGAAAAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAA
ACTAGTTCTTTACCATCATCTTCTTCAAAAGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTTAGCGGTTATAACAGACTTCATGCGAGCTGATGACCGCGATGCATCTTGCGATCTGAGCAGGCTTGAGCTAAAAAACCAAAACCTTGATAGAGAAGCCATGGG
GCAAGTTAGGGAGAAAACCTTAAGAGAGCTTTCCGAGCCTGACGAGGACCAAAGGCCCCTATGTATTGGTGGATCTGTTAAAGTTGCAAAGTGTGGGGTGTGCGGTCTAG
TCGGACATCTAAATGACAAGTGCCCTGACTTAGTGGAAAAGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGCCCGTTGGAGAGACAACCCCAAT
CTGAGATGGGGAAACGACAACCAAAGACCCTCGCAAGCAACTTCCTCTTCAAACAATCAAGATACTAATTTGGAAGATTTAGTTAAAACTCTTGCTACTAATACTATCTC
TTTTCAGAATGAAATGAAGCAACAAATGTCTCATCTAACAAATGCCATAAGCAAATTAGAAGGTAAAGGAAAACTTCTGGCTCAGCCTGATCATGCCAACGTTAGTGCCA
TCTCGCTTAGAAGCGGTAAGATTCTGGAAACCCCTTCAAGCGAAAAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAA
ACTAGTTCTTTACCATCATCTTCTTCAAAAGGATAA
Protein sequenceShow/hide protein sequence
MGLAVITDFMRADDRDASCDLSRLELKNQNLDREAMGQVREKTLRELSEPDEDQRPLCIGGSVKVAKCGVCGLVGHLNDKCPDLVEKANVIRKYDPHSNTYNARWRDNPN
LRWGNDNQRPSQATSSSNNQDTNLEDLVKTLATNTISFQNEMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSSEKKVTSTPILLENKDEKKEEKLE
TSSLPSSSSKG