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PI0002725 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002725
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptiontranscription factor RADIALIS-like
Genome locationchr11:27415396..27417630
RNA-Seq ExpressionPI0002725
SyntenyPI0002725
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148844.1 transcription factor RADIALIS [Cucumis sativus]6.1e-4390.48Show/hide
Query:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYT-SSSTPRTSNTNIKDQEQRMR
        MASISSSS    SSWTPNQNKAFERALAVFDKDTPDRWLNVA A+GGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYT SSS+P TSN NIKDQEQRMR
Subjt:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYT-SSSTPRTSNTNIKDQEQRMR

Query:  NMKLH
        NMKLH
Subjt:  NMKLH

XP_008460938.1 PREDICTED: protein RADIALIS-like 2 [Cucumis melo]2.2e-4591.82Show/hide
Query:  MASISSSSHDSA-SSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSST----PRT-SNTNIKDQ
        MASISSSSHDSA SSWTPNQNKAFERALAVFDKDTPDRWLNVANA+GGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSS+    PRT SN NIKDQ
Subjt:  MASISSSSHDSA-SSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSST----PRT-SNTNIKDQ

Query:  EQRMRNMKLH
        EQRMRNMKLH
Subjt:  EQRMRNMKLH

XP_023513343.1 protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo]3.2e-3678.85Show/hide
Query:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTS-SSTPRTSNTNIKDQEQRMR
        MAS+SSS H  +SSWTP QNKAFERALAVFDKDTPDRWLNVA A+GGGKTPDEVK HFD LVEDVKHIESG VPFP Y+S +S   TSN N+ DQEQRMR
Subjt:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTS-SSTPRTSNTNIKDQEQRMR

Query:  NMKL
        N+KL
Subjt:  NMKL

XP_023515007.1 transcription factor RADIALIS-like [Cucurbita pepo subsp. pepo]6.5e-3783.65Show/hide
Query:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRN
        MASI SSSHDS +SW+PNQNKAFERALAVFDKDTPDRWLNVA A+ G KT DEVKRHF+ LVEDVKHIESG VPFP YTSSS PRTS+ NI DQEQRMRN
Subjt:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRN

Query:  MKLH
        MKLH
Subjt:  MKLH

XP_038902123.1 protein RADIALIS-like 2 [Benincasa hispida]3.7e-4086.67Show/hide
Query:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTS-NTNIKDQEQRMR
        MASI SSSHDS  SWTPNQNKAFERALAVFDKDTPDRWLNVANA+GGGKT DEVKRHFD LVEDVKHIESGRVPFP YTS+STP TS N N+ DQEQRMR
Subjt:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTS-NTNIKDQEQRMR

Query:  NMKLH
        N+KLH
Subjt:  NMKLH

TrEMBL top hitse value%identityAlignment
A0A0A0LL58 MYB transcription factor MYB1423.0e-4390.48Show/hide
Query:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYT-SSSTPRTSNTNIKDQEQRMR
        MASISSSS    SSWTPNQNKAFERALAVFDKDTPDRWLNVA A+GGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYT SSS+P TSN NIKDQEQRMR
Subjt:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYT-SSSTPRTSNTNIKDQEQRMR

Query:  NMKLH
        NMKLH
Subjt:  NMKLH

A0A1S3CDK8 protein RADIALIS-like 21.1e-4591.82Show/hide
Query:  MASISSSSHDSA-SSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSST----PRT-SNTNIKDQ
        MASISSSSHDSA SSWTPNQNKAFERALAVFDKDTPDRWLNVANA+GGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSS+    PRT SN NIKDQ
Subjt:  MASISSSSHDSA-SSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSST----PRT-SNTNIKDQ

Query:  EQRMRNMKLH
        EQRMRNMKLH
Subjt:  EQRMRNMKLH

A0A6J1CYR5 protein RADIALIS-like 21.9e-3477.55Show/hide
Query:  SSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRNMKLH
        SS DS+ SWTPNQNKAFERALAVFDKDTPDRW NVANA+ GGKT DEVKRHFD LVEDVKHIESGR+PFP YT+++T  +SN N+ D+E+RMRN+KLH
Subjt:  SSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRNMKLH

A0A6J1FXX9 protein RADIALIS-like 21.5e-3476.92Show/hide
Query:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTS-SSTPRTSNTNIKDQEQRMR
        MAS++SS    +SSWTP QNKAFERALAVFDKDTPDRWLNVA A+GGGKTPDEVK HFD LVEDVKHIESG VPFP Y+S +S   TSN NI DQEQRMR
Subjt:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTS-SSTPRTSNTNIKDQEQRMR

Query:  NMKL
        ++KL
Subjt:  NMKL

A0A6J1JBS7 protein RADIALIS-like 22.3e-3577.88Show/hide
Query:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTS-SSTPRTSNTNIKDQEQRMR
        MAS+SSS H  +SSWTP +NKAFERALAVFDKDTPDRWLNVA A+GGGKTPDEVK HFD LVEDVKHIE G VPFP Y+S +S   TSN NI DQEQRMR
Subjt:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTS-SSTPRTSNTNIKDQEQRMR

Query:  NMKL
        N+KL
Subjt:  NMKL

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 15.6e-2355.34Show/hide
Query:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRN
        MAS SS S  S+ SWT  QNKAFE+ALA +D+DTP+RW NVA  + GGKT +EVKRH++ LV+D+  IE+G VPFP Y +S     +N  +  +E+RMRN
Subjt:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRN

Query:  MKL
        M+L
Subjt:  MKL

Q1A173 Protein RADIALIS-like 66.2e-2256.44Show/hide
Query:  ISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQR-MRNMK
        ++S+S  S S WT +QNK FERALAV+DKDTPDRW NVA A+ GGKT +EVKRH+D LVED+ +IE+GRVP P Y    T  +++ +I D + R M+N+K
Subjt:  ISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQR-MRNMK

Query:  L
        +
Subjt:  L

Q58FS3 Transcription factor RADIALIS1.7e-2456.12Show/hide
Query:  SSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRNMKL
        +S+  S   W+  +NKAFERALAV+DKDTPDRW NVA A+  G+TP+EVK+H++ LVED+K+IESG+VPFP Y      RT+  N+K  E+R RN+K+
Subjt:  SSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRNMKL

Q8GW75 Protein RADIALIS-like 51.5e-2055.45Show/hide
Query:  ISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQR-MRNMK
        ++SSS  S+SSWT  QNK FERALAV+DKDTPDRW NVA A+ G K+ +EVKRH+D LVED+ +IE   VP PKY +      S   I D + R M+NM+
Subjt:  ISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQR-MRNMK

Query:  L
        +
Subjt:  L

Q9SIJ5 Protein RADIALIS-like 26.0e-2559.22Show/hide
Query:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRN
        MAS S SS+ S  SWT  QNKAFERALAV+D+DTPDRW NVA A+ GGKTP+E KR +D LV D++ IE+G VPFP Y  ++T  ++   ++D+E+RMR+
Subjt:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRN

Query:  MKL
        MKL
Subjt:  MKL

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.1e-2155.45Show/hide
Query:  ISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQR-MRNMK
        ++SSS  S+SSWT  QNK FERALAV+DKDTPDRW NVA A+ G K+ +EVKRH+D LVED+ +IE   VP PKY +      S   I D + R M+NM+
Subjt:  ISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQR-MRNMK

Query:  L
        +
Subjt:  L

AT1G75250.1 RAD-like 61.7e-2262.79Show/hide
Query:  ISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKY-TSSSTPRTSN
        ++S+S  S S WT +QNK FERALAV+DKDTPDRW NVA A+ GGKT +EVKRH+D LVED+ +IE+GRVP P Y T  S  R+ N
Subjt:  ISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKY-TSSSTPRTSN

AT1G75250.2 RAD-like 64.4e-2356.44Show/hide
Query:  ISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQR-MRNMK
        ++S+S  S S WT +QNK FERALAV+DKDTPDRW NVA A+ GGKT +EVKRH+D LVED+ +IE+GRVP P Y    T  +++ +I D + R M+N+K
Subjt:  ISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQR-MRNMK

Query:  L
        +
Subjt:  L

AT2G21650.1 Homeodomain-like superfamily protein4.2e-2659.22Show/hide
Query:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRN
        MAS S SS+ S  SWT  QNKAFERALAV+D+DTPDRW NVA A+ GGKTP+E KR +D LV D++ IE+G VPFP Y  ++T  ++   ++D+E+RMR+
Subjt:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRN

Query:  MKL
        MKL
Subjt:  MKL

AT4G39250.1 RAD-like 14.0e-2455.34Show/hide
Query:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRN
        MAS SS S  S+ SWT  QNKAFE+ALA +D+DTP+RW NVA  + GGKT +EVKRH++ LV+D+  IE+G VPFP Y +S     +N  +  +E+RMRN
Subjt:  MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRN

Query:  MKL
        M+L
Subjt:  MKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATTTCCTCTTCCTCTCATGACTCTGCCTCCTCTTGGACTCCTAACCAAAACAAAGCCTTTGAAAGGGCTTTGGCTGTCTTTGACAAAGATACCCCTGATCG
CTGGCTCAATGTCGCCAACGCCATCGGCGGTGGCAAGACCCCTGATGAAGTCAAGAGACATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCAGGCCGCGTTC
CTTTCCCTAAATACACCTCCTCCTCCACCCCTAGAACCTCCAATACTAACATCAAAGACCAAGAACAGAGGATGAGAAACATGAAACTTCATTAA
mRNA sequenceShow/hide mRNA sequence
TACCATTTTTGCCCCTCAACAATGGCTTCCATTTCCTCTTCCTCTCATGACTCTGCCTCCTCTTGGACTCCTAACCAAAACAAAGCCTTTGAAAGGGCTTTGGCTGTCTT
TGACAAAGATACCCCTGATCGCTGGCTCAATGTCGCCAACGCCATCGGCGGTGGCAAGACCCCTGATGAAGTCAAGAGACATTTCGACCGTCTCGTCGAAGATGTCAAAC
ACATTGAATCAGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCACCCCTAGAACCTCCAATACTAACATCAAAGACCAAGAACAGAGGATGAGAAACATGAAACTT
CATTAAATTGGTTGAAATTGAAAGCAAATGGATGGGATTAAGAAGAATGAAAGTGGATTGGTGGTTGCTGTTTTTGCCCCTAAGATAACACAAAAAAAA
Protein sequenceShow/hide protein sequence
MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRNMKLH