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PI0002868 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002868
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr01:11916743..11920467
RNA-Seq ExpressionPI0002868
SyntenyPI0002868
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038406.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-2775.79Show/hide
Query:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK
        MQEQEQGSVL KKS +QL+ESSKG +IIRENPLF  ST  S+L +KESHL+V+SVMMAD+T EATMVE+E KINFL KVV+ERDHEI ALK+QMK
Subjt:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK

KAA0040518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-2775.79Show/hide
Query:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK
        MQEQEQG VL KKS +QL+ES KGR+IIR+NPLF  ST  S+LS+KESHL+V+SVMM DVT EATMVEME KINFL KVV+ERDHEI ALK+QMK
Subjt:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK

KAA0054701.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-2773.68Show/hide
Query:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK
        MQEQEQ S+LTKK W+QLMES KG + I+ENPLF KST  SD SE+ESHL+V+SVMM DVTAEATM EME KINFL KV++ERDH+I ALK+QMK
Subjt:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK

TYJ96985.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-2775.79Show/hide
Query:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK
        MQEQEQGSVL KKS +QL+ESSKG +IIRENPLF  ST  S+L +KESHLKV+SVMM D+T EATMVE+E KINFL KVV+ERDHEI ALK+QMK
Subjt:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK

TYK23445.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-2775.79Show/hide
Query:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK
        MQEQEQG VL KKS +QL+ES KGR+IIR+NPLF  ST  S+LS+KESHL+V+SVMM DVT EATMVEME KINFL KVV+ERDHEI ALK+QMK
Subjt:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK

TrEMBL top hitse value%identityAlignment
A0A5A7T864 Ty3-gypsy retrotransposon protein1.2e-2775.79Show/hide
Query:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK
        MQEQEQGSVL KKS +QL+ESSKG +IIRENPLF  ST  S+L +KESHL+V+SVMMAD+T EATMVE+E KINFL KVV+ERDHEI ALK+QMK
Subjt:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK

A0A5A7TC87 Ty3-gypsy retrotransposon protein5.6e-2875.79Show/hide
Query:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK
        MQEQEQG VL KKS +QL+ES KGR+IIR+NPLF  ST  S+LS+KESHL+V+SVMM DVT EATMVEME KINFL KVV+ERDHEI ALK+QMK
Subjt:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK

A0A5A7UMC9 Ty3-gypsy retrotransposon protein5.6e-2873.68Show/hide
Query:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK
        MQEQEQ S+LTKK W+QLMES KG + I+ENPLF KST  SD SE+ESHL+V+SVMM DVTAEATM EME KINFL KV++ERDH+I ALK+QMK
Subjt:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK

A0A5D3BEV5 Ty3-gypsy retrotransposon protein1.2e-2775.79Show/hide
Query:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK
        MQEQEQGSVL KKS +QL+ESSKG +IIRENPLF  ST  S+L +KESHLKV+SVMM D+T EATMVE+E KINFL KVV+ERDHEI ALK+QMK
Subjt:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK

A0A5D3DIN4 Ty3-gypsy retrotransposon protein5.6e-2875.79Show/hide
Query:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK
        MQEQEQG VL KKS +QL+ES KGR+IIR+NPLF  ST  S+LS+KESHL+V+SVMM DVT EATMVEME KINFL KVV+ERDHEI ALK+QMK
Subjt:  MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGAACAAGAACAAGGTTCCGTTCTCACTAAGAAAAGTTGGAAACAACTGATGGAATCTTCTAAAGGTAGGGTCATCATCAGAGAGAATCCTTTGTTCTACAAGTC
TACTTCTGTTTCTGATCTATCAGAGAAAGAATCACACCTTAAAGTAATGTCTGTCATGATGGCAGATGTAACAGCTGAAGCAACCATGGTAGAAATGGAGAGCAAAATAA
ATTTCCTAACGAAAGTTGTCGATGAGCGAGATCATGAAATCGTTGCCTTAAAAAATCAGATGAAGCACCGCCCAACCCCACGCCGTCCAGAGTTCGTTCCGCCTGCCTGT
ACTGCTGGAGCTCGTCTGCCTATCCGCGCCGCCTGGATCTTTCGTTCGCGTAGCCTAGTCGTTTCGTCTAGCCGTCCTCCTCTACCTCGCCTAGCCTCCTTCCCTTCTCC
GTGCGTTCTATTTAGGAATCCTACAGTTCCACGAGCAACCCACCGTTTACCTTGCTCCTCTGTCTGCGAGCTGCCGTGCTCTGTTCGCCTTCATCAAGCGGTTCCCTGCC
GCGAACTCTTCCTTGGAGTTGAATCTTGGTGTCGTGTAGTTCTCGTTTTGGCTCGCTGGATTTTGAGCATTTTAGAGCTCCAATTCCATTTTGATTTTGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGAACAAGAACAAGGTTCCGTTCTCACTAAGAAAAGTTGGAAACAACTGATGGAATCTTCTAAAGGTAGGGTCATCATCAGAGAGAATCCTTTGTTCTACAAGTC
TACTTCTGTTTCTGATCTATCAGAGAAAGAATCACACCTTAAAGTAATGTCTGTCATGATGGCAGATGTAACAGCTGAAGCAACCATGGTAGAAATGGAGAGCAAAATAA
ATTTCCTAACGAAAGTTGTCGATGAGCGAGATCATGAAATCGTTGCCTTAAAAAATCAGATGAAGCACCGCCCAACCCCACGCCGTCCAGAGTTCGTTCCGCCTGCCTGT
ACTGCTGGAGCTCGTCTGCCTATCCGCGCCGCCTGGATCTTTCGTTCGCGTAGCCTAGTCGTTTCGTCTAGCCGTCCTCCTCTACCTCGCCTAGCCTCCTTCCCTTCTCC
GTGCGTTCTATTTAGGAATCCTACAGTTCCACGAGCAACCCACCGTTTACCTTGCTCCTCTGTCTGCGAGCTGCCGTGCTCTGTTCGCCTTCATCAAGCGGTTCCCTGCC
GCGAACTCTTCCTTGGAGTTGAATCTTGGTGTCGTGTAGTTCTCGTTTTGGCTCGCTGGATTTTGAGCATTTTAGAGCTCCAATTCCATTTTGATTTTGGATAA
Protein sequenceShow/hide protein sequence
MQEQEQGSVLTKKSWKQLMESSKGRVIIRENPLFYKSTSVSDLSEKESHLKVMSVMMADVTAEATMVEMESKINFLTKVVDERDHEIVALKNQMKHRPTPRRPEFVPPAC
TAGARLPIRAAWIFRSRSLVVSSSRPPLPRLASFPSPCVLFRNPTVPRATHRLPCSSVCELPCSVRLHQAVPCRELFLGVESWCRVVLVLARWILSILELQFHFDFG