CuGenDBv2

Gene ID	PI0002874
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	E3 ubiquitin-protein ligase RNF34
Genome location	chr06:29152912..29155486
RNA-Seq Expression	PI0002874
Synteny	PI0002874
Gene Ontology terms	GO:0000492 - box C/D snoRNP assembly (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0062064 - box C/D snoRNP complex binding (molecular function)
InterPro domains	IPR027921 - NOP protein chaperone 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004147238.2 uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus]

4.2e-88

92.72

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Query:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ
        MRH SKDLLYLERKDLSSSSL    ESSLLVC KNSTSK+P RNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKEN EKYDIEALDGNESEVIQ
Subjt:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTCSSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKSKKRP
        LDLMLGIADLHTPEAV AAESAIIGN+PVIPLTCSSSESESEES DDSITSDHDNDDNEKSDDQ TDCSNR SVKLKRSNSRKTSCRSKSKGKGKSKKRP
Subjt:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTCSSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKSKKRP

Query:  KIQELS
        KIQ LS
Subjt:  KIQELS

XP_008448773.1 PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo]

1.9e-88

92.23

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Query:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ
        MRHASKDLL+LERKDLS+SSL    ESSLLVC KNSTSKEPCRNEKPITEPASKSLVLGRV+DFLGVISEANKKLQMDSKEN +KYDIEALDGNESEVIQ
Subjt:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTCSSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKSKKRP
        LDLMLGIADLHTPEAVAAAESAIIGN+PVIPLTCSSSESESEES DDSITSDHDN+DNEKSDDQNTDCSNR SVKLKRSNSRK SCRSKSKGKGKSKKRP
Subjt:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTCSSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKSKKRP

Query:  KIQELS
        KIQ LS
Subjt:  KIQELS

XP_011650372.1 uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus]

1.7e-92

94.66

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Query:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ
        MRH SKDLLYLERKDLSSSSLGVFNESSLLVC KNSTSK+P RNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKEN EKYDIEALDGNESEVIQ
Subjt:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTCSSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKSKKRP
        LDLMLGIADLHTPEAV AAESAIIGN+PVIPLTCSSSESESEES DDSITSDHDNDDNEKSDDQ TDCSNR SVKLKRSNSRKTSCRSKSKGKGKSKKRP
Subjt:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTCSSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKSKKRP

Query:  KIQELS
        KIQ LS
Subjt:  KIQELS

XP_023005549.1 uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima]

1.7e-73

80.48

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Query:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ
        MRHASKDLL LERKDL SSSL    ESSLLVC KNSTSKEPCRNEKPITEPA KS VLGRVKDFLGV+SEANKKLQ+D+K++ EKYDIEAL+GNESEVI+
Subjt:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTC----SSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKS
        LDLMLGIADLHTPEAVAAAESAIIGN PVIPL C    SSSESESEES DDSITSD++++DNEKSD QNTD  NR SVKLKRS SR+ +CRS+S+ KGKS
Subjt:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTC----SSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKS

Query:  KKRPKIQELS
         KRPKI ELS
Subjt:  KKRPKIQELS

XP_038903017.1 uncharacterized protein LOC120089721 [Benincasa hispida]

8.6e-81

89.37

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Query:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ
        MRH SKDLLYLERKDLSSSSL    ESSLLVC KNSTSKEP RNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMD+K+N EKYDIEALDGNES+VI+
Subjt:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTC-SSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKSKKR
        LDLMLGIADLHTPEAVAAAESAIIGN PVIPLTC SSSESESEES DDSITS+ +NDDNEKSDDQNTD SNRSSVKLKRSNSRKTSCRSKSKGK KS+KR
Subjt:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTC-SSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKSKKR

Query:  PKIQELS
        PKI ELS
Subjt:  PKIQELS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L448 Uncharacterized protein

2.1e-88

92.72

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Query:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ
        MRH SKDLLYLERKDLSSSSL    ESSLLVC KNSTSK+P RNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKEN EKYDIEALDGNESEVIQ
Subjt:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTCSSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKSKKRP
        LDLMLGIADLHTPEAV AAESAIIGN+PVIPLTCSSSESESEES DDSITSDHDNDDNEKSDDQ TDCSNR SVKLKRSNSRKTSCRSKSKGKGKSKKRP
Subjt:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTCSSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKSKKRP

Query:  KIQELS
        KIQ LS
Subjt:  KIQELS

A0A1S3BJW4 uncharacterized protein LOC103490838

9.2e-89

92.23

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Query:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ
        MRHASKDLL+LERKDLS+SSL    ESSLLVC KNSTSKEPCRNEKPITEPASKSLVLGRV+DFLGVISEANKKLQMDSKEN +KYDIEALDGNESEVIQ
Subjt:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTCSSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKSKKRP
        LDLMLGIADLHTPEAVAAAESAIIGN+PVIPLTCSSSESESEES DDSITSDHDN+DNEKSDDQNTDCSNR SVKLKRSNSRK SCRSKSKGKGKSKKRP
Subjt:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTCSSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKSKKRP

Query:  KIQELS
        KIQ LS
Subjt:  KIQELS

A0A5D3CJH5 E3 ubiquitin-protein ligase RNF34

9.2e-89

92.23

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Query:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ
        MRHASKDLL+LERKDLS+SSL    ESSLLVC KNSTSKEPCRNEKPITEPASKSLVLGRV+DFLGVISEANKKLQMDSKEN +KYDIEALDGNESEVIQ
Subjt:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTCSSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKSKKRP
        LDLMLGIADLHTPEAVAAAESAIIGN+PVIPLTCSSSESESEES DDSITSDHDN+DNEKSDDQNTDCSNR SVKLKRSNSRK SCRSKSKGKGKSKKRP
Subjt:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTCSSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKSKKRP

Query:  KIQELS
        KIQ LS
Subjt:  KIQELS

A0A6J1F913 uncharacterized protein LOC111443185 isoform X1

2.4e-73

80.86

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Query:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ
        MRHASKDLL LERKDL SSS     ESSLLVC KNSTSKEPCRNEKPITEPA KS VLGRVKDFLGV+SEANKKLQ+D+K++ EKYDIEAL+G+ESEVI+
Subjt:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTCSSS---ESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKSK
        LDLMLGIADLHTPEAVAAAESAIIGN PVI L CSSS   ESESEES DDSITSD+++DDNEKSD+QNTD  NR SVKLKR  SRKT+CRS+SK KGKS 
Subjt:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTCSSS---ESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKSK

Query:  KRPKIQELS
        KRPKI ELS
Subjt:  KRPKIQELS

A0A6J1KZJ8 uncharacterized protein LOC111498503 isoform X1

8.4e-74

80.48

Show/hide

Query:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ
        MRHASKDLL LERKDL SSSL    ESSLLVC KNSTSKEPCRNEKPITEPA KS VLGRVKDFLGV+SEANKKLQ+D+K++ EKYDIEAL+GNESEVI+
Subjt:  MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTC----SSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKS
        LDLMLGIADLHTPEAVAAAESAIIGN PVIPL C    SSSESESEES DDSITSD++++DNEKSD QNTD  NR SVKLKRS SR+ +CRS+S+ KGKS
Subjt:  LDLMLGIADLHTPEAVAAAESAIIGNYPVIPLTC----SSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKS

Query:  KKRPKIQELS
         KRPKI ELS
Subjt:  KKRPKIQELS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G71430.1 unknown protein

3.9e-23

45.61

Show/hide

Query:  KDLLYLERKDLSSSSLGVFNESSLLVC---NKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQLD
        KDLL LE K+ SSSS     +S+LL+C   NK     E     KP   P  KS +LG++K FLGV++EANKK    S+ N E Y+IEAL GNESE+I++D
Subjt:  KDLLYLERKDLSSSSLGVFNESSLLVC---NKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQLD

Query:  LMLGIADLHTPEAVAAAESAIIGNYPVIPLTCSSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSS
        LMLG+ADL+TPEAV+AAE+AI G  P      SSS+ ES+              ++E  + ++ +CS + S
Subjt:  LMLGIADLHTPEAVAAAESAIIGNYPVIPLTCSSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSS

Sequences

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CDS sequence

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ATGCGGCATGCTAGCAAGGATCTTTTGTATTTGGAGCGGAAGGATTTATCCTCTTCGTCTTTAGGTGTTTTTAATGAATCCTCATTGCTAGTTTGTAATAAAAACTCAAC
GTCCAAGGAGCCTTGTCGGAATGAAAAACCCATTACAGAACCAGCTTCAAAAAGCTTAGTATTGGGAAGAGTCAAAGACTTTTTGGGAGTAATATCAGAAGCTAATAAAA
AGCTGCAAATGGATTCAAAGGAAAATGTTGAAAAATATGATATTGAAGCCCTTGATGGCAATGAATCAGAAGTGATTCAATTGGACCTGATGTTGGGTATTGCTGATCTT
CATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATTGGCAATTACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAATCAGAGTCCGAAGAGAGTTGTGATGA
TAGTATTACCAGTGACCACGATAACGATGACAATGAAAAGAGTGATGATCAGAATACTGACTGCAGTAACAGATCATCAGTTAAACTCAAAAGATCGAATTCTAGAAAAA
CAAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGAGCTCTCTTAA

mRNA sequence

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AAATAATACACCACTAATTTTGGCAGACCCATTATTTTAACCCTAGTTCACGTTCAGCCATTGCGTACCCACCTCACGACGTCTCAGTGGGTGTTGGAAGCCTTCCGACG
ACGTCTATTCAGCTCTCCCTTTGCTGTTGTGACCAGCTAGAAGAAGGAAAGATGCGGCATGCTAGCAAGGATCTTTTGTATTTGGAGCGGAAGGATTTATCCTCTTCGTC
TTTAGGTGTTTTTAATGAATCCTCATTGCTAGTTTGTAATAAAAACTCAACGTCCAAGGAGCCTTGTCGGAATGAAAAACCCATTACAGAACCAGCTTCAAAAAGCTTAG
TATTGGGAAGAGTCAAAGACTTTTTGGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATTCAAAGGAAAATGTTGAAAAATATGATATTGAAGCCCTTGATGGC
AATGAATCAGAAGTGATTCAATTGGACCTGATGTTGGGTATTGCTGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATTGGCAATTACCCTGTAAT
TCCATTGACTTGTAGTAGTAGCGAATCAGAGTCCGAAGAGAGTTGTGATGATAGTATTACCAGTGACCACGATAACGATGACAATGAAAAGAGTGATGATCAGAATACTG
ACTGCAGTAACAGATCATCAGTTAAACTCAAAAGATCGAATTCTAGAAAAACAAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAA
GAGCTCTCTTAAGATCCATCTTTTGATCTGATCTGTTGCGTCAATATGGATGCATTGTCATGGTTTGAAAGTTTCGTTCACAATCGATGTCGTTGGGGGGAGTATATGAA
GTTTCTGAAGCTTGCACTGACAAAATCTCCAAGATTGTTTGCAAGCCTAGTTCTTTGAGCTTGGGCCGTAGGAACCGATTTTTTCTCAGCCTTGGGATTTCTAGCCATTT
ATCTTGTCAACTTTATCACAATTTCAAGTGCAGGTAAGGTGCTGTCTTTATGCATTTCTATTAGGAAATCTAATAGATTTTAAGTTGTAATTAGTCTTGGTCAGTTTCCC
AATTTTGGTTTGTATACTTGATGTCAAACTTCGATGTTTCAAAAATGGTCTTTTATGTGTGTGTGTGTTGTAGCTTCAAAGGAGAAGTTAAATAGTTTTGGCTAAAAATC
ATGTGTATGGATAATTCTTAGTAAGAGAAGTTTTTTTTTTAAATGGTAAGAAGTGTTTACGTAGTTCATGTTTGGGATTCA

Protein sequence

Show/hide protein sequence

MRHASKDLLYLERKDLSSSSLGVFNESSLLVCNKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENVEKYDIEALDGNESEVIQLDLMLGIADL
HTPEAVAAAESAIIGNYPVIPLTCSSSESESEESCDDSITSDHDNDDNEKSDDQNTDCSNRSSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQELS

PI0002874 (gene) of Melon (PI 482460) v1 genome