CuGenDBv2

Gene ID	PI0002911
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	photosystem II repair protein PSB27-H1, chloroplastic
Genome location	chr01:2806917..2809667
RNA-Seq Expression	PI0002911
Synteny	PI0002911
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0071484 - cellular response to light intensity (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6572353.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-59

85.33

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Query:  QSTISATVTTTTV----RRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLG
        +S+I+A  TTTT     RRREFLSL+ASVLAPS+VLFP +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSN WVAKYRKEK+LLG
Subjt:  QSTISATVTTTTV----RRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLG

Query:  RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_004136817.1 photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus]

6.3e-69

92.9

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Query:  QEPLHTSQTQSTISATVTTTTVRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE
        Q P    + +STISA VTT TVRRREFLSL+ASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE
Subjt:  QEPLHTSQTQSTISATVTTTTVRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE

Query:  KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_008455335.1 PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo]

5.3e-68

92.26

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Query:  QEPLHTSQTQSTISATVTTTTVRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE
        Q P    + +STISA VTT TVRRR+FLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSN WVAKYRKE
Subjt:  QEPLHTSQTQSTISATVTTTTVRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE

Query:  KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_022952622.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]

9.1e-60

86.58

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Query:  QSTISATVTTTT---VRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR
        +S+ISA  TTTT    RRREFLSL+ASVLAPS+VLFP +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSN WVAKYRKEK+LLGR
Subjt:  QSTISATVTTTT---VRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR

Query:  ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_038887363.1 photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida]

1.9e-65

88.39

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Query:  QEPLHTSQTQSTISATVTTTTVRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE
        Q P    + +STISA  T TTVRRR+FLSL+ASVLAPS+VLFPQSPALA+SDDEYVKDT+EVIGKVR TITMDRNDPNVAAAVA+LRESSNFWVAKYRKE
Subjt:  QEPLHTSQTQSTISATVTTTTVRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE

Query:  KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K1S2 Uncharacterized protein

3.0e-69

92.9

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Query:  QEPLHTSQTQSTISATVTTTTVRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE
        Q P    + +STISA VTT TVRRREFLSL+ASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE
Subjt:  QEPLHTSQTQSTISATVTTTTVRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE

Query:  KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A1S3C1X2 photosystem II repair protein PSB27-H1, chloroplastic

2.6e-68

92.26

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Query:  QEPLHTSQTQSTISATVTTTTVRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE
        Q P    + +STISA VTT TVRRR+FLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSN WVAKYRKE
Subjt:  QEPLHTSQTQSTISATVTTTTVRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE

Query:  KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A5A7SR30 Photosystem II repair protein PSB27-H1

2.6e-68

92.26

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Query:  QEPLHTSQTQSTISATVTTTTVRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE
        Q P    + +STISA VTT TVRRR+FLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSN WVAKYRKE
Subjt:  QEPLHTSQTQSTISATVTTTTVRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE

Query:  KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1GKW7 photosystem II repair protein PSB27-H1, chloroplastic-like

4.4e-60

86.58

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Query:  QSTISATVTTTT---VRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR
        +S+ISA  TTTT    RRREFLSL+ASVLAPS+VLFP +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSN WVAKYRKEK+LLGR
Subjt:  QSTISATVTTTT---VRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR

Query:  ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1HZH1 photosystem II repair protein PSB27-H1, chloroplastic-like

4.4e-60

86.58

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Query:  QSTISATVTTTT---VRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR
        +S+ISA  TTTT    RRREFLSL+ASVLAPS+VLFP +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSN WVAKYRKEK+LLGR
Subjt:  QSTISATVTTTT---VRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR

Query:  ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

SwissProt top hits

e value

%identity

Alignment

Q9LR64 Photosystem II repair protein PSB27-H1, chloroplastic

1.2e-46

71.64

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Query:  RREFLSLSA--SVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSG
        RR+FLSL+A  ++L  S      +P  AA D+EY+KDT+ VI KVR+T++M + DPNVA AVA+LRE+SN WVAKYRKEKALLG+ASFRD+YSALNAVSG
Subjt:  RREFLSLSA--SVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSG

Query:  HYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        HY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  HYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

3.0e-05

27.55

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Query:  YVKDTNEVIGKVRTTITMDRNDPNVAAAVAD-LRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL
        Y+K   EV+  +R ++  +  D       AD  +ES   +++ +R +K + G  S+ ++ + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Subjt:  YVKDTNEVIGKVRTTITMDRNDPNVAAAVAD-LRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL

Arabidopsis top hits

e value

%identity

Alignment

AT1G03600.1 photosystem II family protein

8.5e-48

71.64

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Query:  RREFLSLSA--SVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSG
        RR+FLSL+A  ++L  S      +P  AA D+EY+KDT+ VI KVR+T++M + DPNVA AVA+LRE+SN WVAKYRKEKALLG+ASFRD+YSALNAVSG
Subjt:  RREFLSLSA--SVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSG

Query:  HYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        HY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  HYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

AT1G05385.1 photosystem II 11 kDa protein-related

2.1e-06

27.55

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Query:  YVKDTNEVIGKVRTTITMDRNDPNVAAAVAD-LRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL
        Y+K   EV+  +R ++  +  D       AD  +ES   +++ +R +K + G  S+ ++ + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Subjt:  YVKDTNEVIGKVRTTITMDRNDPNVAAAVAD-LRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL

Sequences

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CDS sequence

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ATGGAGAAGCTATGTCATGCATGTTCTTCTTCTTGTTCCCTTGCCCTTTTGCAAGAGCCCCTTCATACCTCTCAAACCCAATCCACCATTTCCGCCACCGTAACAACTAC
CACCGTCCGCCGCCGCGAGTTCCTTTCTTTGTCCGCTTCTGTTCTAGCGCCGTCGTTTGTTCTGTTTCCTCAATCTCCGGCACTGGCGGCTTCGGACGACGAGTACGTGA
AGGATACCAATGAGGTGATTGGTAAGGTGAGAACGACGATCACAATGGACCGAAATGACCCGAATGTGGCAGCAGCGGTGGCGGATCTTCGAGAAAGTTCGAATTTTTGG
GTGGCTAAGTATAGGAAGGAGAAAGCTCTATTGGGAAGAGCTTCGTTTAGAGATATGTATTCGGCATTGAATGCGGTGTCGGGGCATTATATTAGCTTCGGACCGACGGC
GCCGATACCAGCGAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

mRNA sequence

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Protein sequence

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MEKLCHACSSSCSLALLQEPLHTSQTQSTISATVTTTTVRRREFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFW
VAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

PI0002911 (gene) of Melon (PI 482460) v1 genome