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PI0002916 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002916
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr10:11978147..11978812
RNA-Seq ExpressionPI0002916
SyntenyPI0002916
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036695.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-2249.24Show/hide
Query:  MASSSRAPKHLWTREEESTLVECLVELVS-------------------------------SHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVG
        M++S+RAP+H+WT+E+E TLVECL+ELVS                               SHPAAKGLLNK F YY+EL+YVFG+DRAT   TETF DVG
Subjt:  MASSSRAPKHLWTREEESTLVECLVELVS-------------------------------SHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVG

Query:  LNVL-GRYGRFPTNDGNNVEIPIMYSQRLNIS
         N   GRY RF   DGN  + P +YSQ +++S
Subjt:  LNVL-GRYGRFPTNDGNNVEIPIMYSQRLNIS

KAA0040490.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-2454.62Show/hide
Query:  MASSSRAPKHLWTREEESTLVECLVELV-------------------SSHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPT
        M++S+RAP+H+WT+EEE TLVECL+ELV                    SHPAAKGLLNKLF YY+E +YVFG+DRAT    +TFVDVG N  G Y  F  
Subjt:  MASSSRAPKHLWTREEESTLVECLVELV-------------------SSHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPT

Query:  NDGNNVEIPIMYSQRLNIS
         DGN  E PI+YSQR+++S
Subjt:  NDGNNVEIPIMYSQRLNIS

KAA0040600.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-2348.85Show/hide
Query:  MASSSRAPKHLWTREEESTLVECLVELVS-------------------------------SHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVG
        M++S+RAP+H+WT+EEE TLV+CL+ELVS                               SHPAAKGLLNKLF YY+EL+YVFG+DRAT    ETF DVG
Subjt:  MASSSRAPKHLWTREEESTLVECLVELVS-------------------------------SHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVG

Query:  LNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS
         N    + RF   DGN  E P +YSQR+++S
Subjt:  LNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS

KAA0050190.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-2261Show/hide
Query:  MASSSRAPKHLWTREEESTLVECLVELVSSHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS
        MA+SS APKH+WT+EE+ TLVECLVEL  SHPAAKGL NK F YY+EL+YVFG DR  +   +TF DVG N    Y RF   DGN  E P MYSQ +++S
Subjt:  MASSSRAPKHLWTREEESTLVECLVELVSSHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS

TYK00096.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.5e-2359Show/hide
Query:  MASSSRAPKHLWTREEESTLVECLVELVSSHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS
        MA+SSRAPKH+W +E+E TLVECLVEL  SH A K LLNK F YY+EL+YVF +DRAT    ETFVD+G N    Y  F  +DGN+++ P MYSQ +++S
Subjt:  MASSSRAPKHLWTREEESTLVECLVELVSSHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS

TrEMBL top hitse value%identityAlignment
A0A5A7T5F8 Retrotransposon protein8.1e-2349.24Show/hide
Query:  MASSSRAPKHLWTREEESTLVECLVELVS-------------------------------SHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVG
        M++S+RAP+H+WT+E+E TLVECL+ELVS                               SHPAAKGLLNK F YY+EL+YVFG+DRAT   TETF DVG
Subjt:  MASSSRAPKHLWTREEESTLVECLVELVS-------------------------------SHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVG

Query:  LNVL-GRYGRFPTNDGNNVEIPIMYSQRLNIS
         N   GRY RF   DGN  + P +YSQ +++S
Subjt:  LNVL-GRYGRFPTNDGNNVEIPIMYSQRLNIS

A0A5A7TB06 Retrotransposon protein5.1e-2554.62Show/hide
Query:  MASSSRAPKHLWTREEESTLVECLVELV-------------------SSHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPT
        M++S+RAP+H+WT+EEE TLVECL+ELV                    SHPAAKGLLNKLF YY+E +YVFG+DRAT    +TFVDVG N  G Y  F  
Subjt:  MASSSRAPKHLWTREEESTLVECLVELV-------------------SSHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPT

Query:  NDGNNVEIPIMYSQRLNIS
         DGN  E PI+YSQR+++S
Subjt:  NDGNNVEIPIMYSQRLNIS

A0A5A7TBB0 Retrotransposon protein9.5e-2448.85Show/hide
Query:  MASSSRAPKHLWTREEESTLVECLVELVS-------------------------------SHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVG
        M++S+RAP+H+WT+EEE TLV+CL+ELVS                               SHPAAKGLLNKLF YY+EL+YVFG+DRAT    ETF DVG
Subjt:  MASSSRAPKHLWTREEESTLVECLVELVS-------------------------------SHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVG

Query:  LNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS
         N    + RF   DGN  E P +YSQR+++S
Subjt:  LNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS

A0A5A7U4I8 Retrotransposon protein1.1e-2261Show/hide
Query:  MASSSRAPKHLWTREEESTLVECLVELVSSHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS
        MA+SS APKH+WT+EE+ TLVECLVEL  SHPAAKGL NK F YY+EL+YVFG DR  +   +TF DVG N    Y RF   DGN  E P MYSQ +++S
Subjt:  MASSSRAPKHLWTREEESTLVECLVELVSSHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS

A0A5D3BP98 Putative nuclease HARBI17.3e-2459Show/hide
Query:  MASSSRAPKHLWTREEESTLVECLVELVSSHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS
        MA+SSRAPKH+W +E+E TLVECLVEL  SH A K LLNK F YY+EL+YVF +DRAT    ETFVD+G N    Y  F  +DGN+++ P MYSQ +++S
Subjt:  MASSSRAPKHLWTREEESTLVECLVELVSSHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGTTCGTCACGGGCGCCTAAACACTTGTGGACGAGAGAGGAGGAGTCCACCCTGGTTGAGTGCTTGGTGGAATTGGTCTCTAGCCATCCTGCCGCTAAGGGCCT
CCTAAACAAACTGTTTCTCTATTATAACGAGCTGAGCTACGTGTTCGGGAAAGATCGTGCTACGGAAGCACACACGGAGACGTTTGTCGATGTAGGGTTAAATGTGCTTG
GAAGGTACGGAAGATTTCCCACTAACGATGGAAACAATGTGGAGATCCCTATAATGTACAGTCAGAGACTCAACATATCGCCGACGACATCATGGGCTTACGACCTGGTT
GCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGTTCGTCACGGGCGCCTAAACACTTGTGGACGAGAGAGGAGGAGTCCACCCTGGTTGAGTGCTTGGTGGAATTGGTCTCTAGCCATCCTGCCGCTAAGGGCCT
CCTAAACAAACTGTTTCTCTATTATAACGAGCTGAGCTACGTGTTCGGGAAAGATCGTGCTACGGAAGCACACACGGAGACGTTTGTCGATGTAGGGTTAAATGTGCTTG
GAAGGTACGGAAGATTTCCCACTAACGATGGAAACAATGTGGAGATCCCTATAATGTACAGTCAGAGACTCAACATATCGCCGACGACATCATGGGCTTACGACCTGGTT
GCTTGA
Protein sequenceShow/hide protein sequence
MASSSRAPKHLWTREEESTLVECLVELVSSHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPTNDGNNVEIPIMYSQRLNISPTTSWAYDLV
A