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PI0002945 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002945
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr09:14735467..14736858
RNA-Seq ExpressionPI0002945
SyntenyPI0002945
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]7.1e-4069.72Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNTISKLEG
        T  ISK++G
Subjt:  TNTISKLEG

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.5e-4272.48Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNTISKLEG
        T  ISK++G
Subjt:  TNTISKLEG

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.9e-4170.64Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNTISKLEG
        T  ISK++G
Subjt:  TNTISKLEG

KAA0053321.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-4070.75Show/hide
Query:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNT
        +KV KCGVCGL+GHPNDKCP+++E+ N++R+YDP+GNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT  
Subjt:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNT

Query:  ISKLEG
        ISK++G
Subjt:  ISKLEG

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]4.9e-4170.64Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNTISKLEG
        T  ISK++G
Subjt:  TNTISKLEG

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919102.4e-4170.64Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNTISKLEG
        T  ISK++G
Subjt:  TNTISKLEG

A0A5A7UID2 Retrotransposon gag protein9.1e-4170.75Show/hide
Query:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNT
        +KV KCGVCGL+GHPNDKCP+++E+ N++R+YDP+GNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT  
Subjt:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNT

Query:  ISKLEG
        ISK++G
Subjt:  ISKLEG

A0A5D3CFE7 Retrotransposon gag protein3.4e-4069.72Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNTISKLEG
        T  ISK++G
Subjt:  TNTISKLEG

A0A5D3CRR8 Retrotransposon gag protein2.2e-4272.48Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNTISKLEG
        T  ISK++G
Subjt:  TNTISKLEG

A0A5D3DCG3 Retrotransposon gag protein2.4e-4170.64Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNTISKLEG
        T  ISK++G
Subjt:  TNTISKLEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAGCAACTT
CATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTAACCAAC
ACAATAAGCAAACTAGAAGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAGCAACTT
CATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTAACCAAC
ACAATAAGCAAACTAGAAGGTTAA
Protein sequenceShow/hide protein sequence
MAPLPGSDGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTN
TISKLEG