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PI0002953 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002953
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:12069029..12070361
RNA-Seq ExpressionPI0002953
SyntenyPI0002953
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033247.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.9e-2470.42Show/hide
Query:  GGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
        G  +KV KCG CGL+GHPNDKCP ++E+ N++RKYDPHGNTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ
Subjt:  GGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.0e-2569.33Show/hide
Query:  SGTDGGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
        S   G  +KV KCG CGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQ
Subjt:  SGTDGGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-2466.67Show/hide
Query:  SGTDGGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
        S   G  +KV KCG CGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ
Subjt:  SGTDGGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
TYK19600.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-2470.42Show/hide
Query:  GGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
        G  +KV KCG CGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ
Subjt:  GGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]2.2e-2466.67Show/hide
Query:  SGTDGGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
        S   G  +KV KCG CGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ
Subjt:  SGTDGGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919101.1e-2466.67Show/hide
Query:  SGTDGGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
        S   G  +KV KCG CGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ
Subjt:  SGTDGGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
A0A5A7SVA1 Retrotransposon gag protein1.4e-2470.42Show/hide
Query:  GGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
        G  +KV KCG CGL+GHPNDKCP ++E+ N++RKYDPHGNTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ
Subjt:  GGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
A0A5D3CRR8 Retrotransposon gag protein9.6e-2669.33Show/hide
Query:  SGTDGGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
        S   G  +KV KCG CGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQ
Subjt:  SGTDGGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
A0A5D3D815 Retrotransposon gag protein6.2e-2570.42Show/hide
Query:  GGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
        G  +KV KCG CGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ
Subjt:  GGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
A0A5D3DCG3 Retrotransposon gag protein1.1e-2466.67Show/hide
Query:  SGTDGGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
        S   G  +KV KCG CGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ
Subjt:  SGTDGGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACCGTTGTCGGGGACCGACGGTGGATCTGTAAAAGTTGCAAAATGTGGAGATTGTGGTTTAATTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAACGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAACGATAACCAACGACCCGCACAAGCAACTT
CATCCTCAAACAATCAAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCACCGTTGTCGGGGACCGACGGTGGATCTGTAAAAGTTGCAAAATGTGGAGATTGTGGTTTAATTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAACGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAACGATAACCAACGACCCGCACAAGCAACTT
CATCCTCAAACAATCAAGAATGA
Protein sequenceShow/hide protein sequence
MAPLSGTDGGSVKVAKCGDCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQE