CuGenDBv2

Gene ID	PI0002956
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Genome location	chr11:30868953..30869390
RNA-Seq Expression	PI0002956
Synteny	PI0002956
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040414.1 uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]

8.0e-41

63.83

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Query:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE
        MS EE H SP EQVIE P+TRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ ++GRL +NFEELVQENAEIT+ AKE++ED+GR+F++EL E
Subjt:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE

Query:  VA---LALKSLIEGELRELHSKYNSFGAKIDLFRMSFQTRY
        +A     LK+ +EGEL  LH+K  SF  ++D   +  ++++
Subjt:  VA---LALKSLIEGELRELHSKYNSFGAKIDLFRMSFQTRY

KAA0040659.1 uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa]

1.8e-40

63.83

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Query:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE
        MS EE H SP EQVIE P+TRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ ++GRL + FEELVQENAEIT+ AKE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE

Query:  VA---LALKSLIEGELRELHSKYNSFGAKIDLFRMSFQTRY
        +A     LK+ +EGEL +LH+K  SF  ++D   +  ++++
Subjt:  VA---LALKSLIEGELRELHSKYNSFGAKIDLFRMSFQTRY

KAA0042140.1 uncharacterized protein E6C27_scaffold67G006290 [Cucumis melo var. makuwa]

3.0e-40

67.18

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Query:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE
        MS EE H SP EQVIE P+TRGRK+QHSPTRRSKSKGP  REHVDTRLTNLE+G+E+VQ ++GRL +NFEELVQENAEIT+ AKE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE

Query:  VA---LALKSLIEGELRELHSKYNSFGAKID
        +A     LK+ +EGEL +LH+K  SF  ++D
Subjt:  VA---LALKSLIEGELRELHSKYNSFGAKID

KAA0065760.1 polyprotein [Cucumis melo var. makuwa]

2.3e-40

63.12

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Query:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE
        MS EE H SP EQVIE P+TRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ ++GRL +NFEELVQENAEIT+ AKE++ED+GR+F++EL E
Subjt:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE

Query:  V---ALALKSLIEGELRELHSKYNSFGAKIDLFRMSFQTRY
        +      LK+ +EGEL  LH+K  SF  ++D   +  ++++
Subjt:  V---ALALKSLIEGELRELHSKYNSFGAKIDLFRMSFQTRY

XP_008446938.1 PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo]

1.8e-40

63.83

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Query:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE
        MS EE H SP EQVIE P+TRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ ++GRL +NFEELV ENAEIT+ AKE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE

Query:  VA---LALKSLIEGELRELHSKYNSFGAKIDLFRMSFQTRY
        +A     LK+ +EGEL  LH+K  SF  ++D   +  ++++
Subjt:  VA---LALKSLIEGELRELHSKYNSFGAKIDLFRMSFQTRY

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BG92 uncharacterized protein LOC103489499

8.6e-41

63.83

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Query:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE
        MS EE H SP EQVIE P+TRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ ++GRL +NFEELV ENAEIT+ AKE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE

Query:  VA---LALKSLIEGELRELHSKYNSFGAKIDLFRMSFQTRY
        +A     LK+ +EGEL  LH+K  SF  ++D   +  ++++
Subjt:  VA---LALKSLIEGELRELHSKYNSFGAKIDLFRMSFQTRY

A0A5A7TAA5 Uncharacterized protein

3.9e-41

63.83

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Query:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE
        MS EE H SP EQVIE P+TRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ ++GRL +NFEELVQENAEIT+ AKE++ED+GR+F++EL E
Subjt:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE

Query:  VA---LALKSLIEGELRELHSKYNSFGAKIDLFRMSFQTRY
        +A     LK+ +EGEL  LH+K  SF  ++D   +  ++++
Subjt:  VA---LALKSLIEGELRELHSKYNSFGAKIDLFRMSFQTRY

A0A5A7THC0 Reverse transcriptase domain-containing protein

8.6e-41

63.83

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Query:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE
        MS EE H SP EQVIE P+TRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ ++GRL + FEELVQENAEIT+ AKE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE

Query:  VA---LALKSLIEGELRELHSKYNSFGAKIDLFRMSFQTRY
        +A     LK+ +EGEL +LH+K  SF  ++D   +  ++++
Subjt:  VA---LALKSLIEGELRELHSKYNSFGAKIDLFRMSFQTRY

A0A5A7VEX8 Polyprotein

1.1e-40

63.12

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Query:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE
        MS EE H SP EQVIE P+TRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ ++GRL +NFEELVQENAEIT+ AKE++ED+GR+F++EL E
Subjt:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE

Query:  V---ALALKSLIEGELRELHSKYNSFGAKIDLFRMSFQTRY
        +      LK+ +EGEL  LH+K  SF  ++D   +  ++++
Subjt:  V---ALALKSLIEGELRELHSKYNSFGAKIDLFRMSFQTRY

A0A5D3D3V4 Retrotrans_gag domain-containing protein

1.5e-40

67.18

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Query:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE
        MS EE H SP EQVIE P+TRGRK+QHSPTRRSKSKGP  REHVDTRLTNLE+G+E+VQ ++GRL +NFEELVQENAEIT+ AKE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNE

Query:  VA---LALKSLIEGELRELHSKYNSFGAKID
        +A     LK+ +EGEL +LH+K  SF  ++D
Subjt:  VA---LALKSLIEGELRELHSKYNSFGAKID

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCGACAGAGGAAAGGCATGTTTCACCCGAGGAACAAGTCATCGAAGTACCTATTACTCGGGGAAGGAAAGAACAACATTCTCCAACCCGACGCTCGAAATCTAAGGG
ACCGGCTGCGAGAGAGCATGTCGACACCCGCCTTACCAACCTCGAGCAAGGCTTGGAGGAGGTTCAATTCTCGATTGGTAGGCTGGATGACAACTTTGAAGAATTGGTCC
AGGAGAATGCTGAAATTACAACTGCTGCAAAGGAGCTTGTCGAGGATCTGGGACGATCGTTTAAAAAGGAACTAAACGAAGTGGCATTGGCACTAAAGTCACTCATTGAA
GGTGAGTTACGAGAATTACATTCTAAATATAACTCCTTTGGTGCCAAGATAGACTTGTTCCGAATGTCGTTCCAAACACGTTACCGGTGCAAGCACTTCGACCAGTAA

mRNA sequence

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Protein sequence

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MSTEERHVSPEEQVIEVPITRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSIGRLDDNFEELVQENAEITTAAKELVEDLGRSFKKELNEVALALKSLIE
GELRELHSKYNSFGAKIDLFRMSFQTRYRCKHFDQ

PI0002956 (gene) of Melon (PI 482460) v1 genome