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PI0002974 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002974
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr10:6869160..6869444
RNA-Seq ExpressionPI0002974
SyntenyPI0002974
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051437.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-2878.49Show/hide
Query:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH
        NASLNKIEFNLTTLLNELQ FQT T+GKGK+VEANVATTK+ FLRGSSSK K G S PN Q+KKKGK KTPK +KGKK  +K K YHCGQNGH
Subjt:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH

KAA0061924.1 gag/pol protein [Cucumis melo var. makuwa]5.4e-3080.65Show/hide
Query:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH
        NASLNKIEFN+T LLNELQ FQT T+GK K+VEANVATTK KF RGSSSKNKTGPS P  Q+KKKGKGKTPK +KGKK A+KGK YHCGQNGH
Subjt:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH

TYK21784.1 gag/pol protein [Cucumis melo var. makuwa]4.5e-2979.57Show/hide
Query:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH
        NASLNKI+FNLTTLLNELQ FQT T+GKGK+VEANVATTK KF RGSSSKNK GPS P  Q+KKK KGKTPK +KGKK A+KGK YHC QNGH
Subjt:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH

TYK22216.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-2878.49Show/hide
Query:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH
        NASLNKIEFNLTTLLNELQ FQT T+GKGK+VEANVATTK+ FLRGSSSK K G S PN Q+KKKGK KTPK +KGKK  +K K YHCGQNGH
Subjt:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH

TYK31700.1 gag/pol protein [Cucumis melo var. makuwa]3.8e-2877.42Show/hide
Query:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH
        NASLNKIEFNLTTLLNELQ FQT T+GKGK+VEANVA TK+KF RGSSSK K GP  P  Q+KKKGKGKTPK +KGKK ++KGK YH GQNGH
Subjt:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH

TrEMBL top hitse value%identityAlignment
A0A5A7UA90 Gag/pol protein1.9e-2876.6Show/hide
Query:  MNASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH
        MNASLNKIEFNLTTLLNELQ FQ  T  KGKEVEANVATTK+KF RGSSSK+K GPS PN +++KKGKGKTPK +K KK  +KGK YHCG NGH
Subjt:  MNASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH

A0A5A7UAN2 Gag/pol protein6.4e-2978.49Show/hide
Query:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH
        NASLNKIEFNLTTLLNELQ FQT T+GKGK+VEANVATTK+ FLRGSSSK K G S PN Q+KKKGK KTPK +KGKK  +K K YHCGQNGH
Subjt:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH

A0A5D3DDY9 Gag/pol protein2.2e-2979.57Show/hide
Query:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH
        NASLNKI+FNLTTLLNELQ FQT T+GKGK+VEANVATTK KF RGSSSKNK GPS P  Q+KKK KGKTPK +KGKK A+KGK YHC QNGH
Subjt:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH

A0A5D3DF48 Gag/pol protein6.4e-2978.49Show/hide
Query:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH
        NASLNKIEFNLTTLLNELQ FQT T+GKGK+VEANVATTK+ FLRGSSSK K G S PN Q+KKKGK KTPK +KGKK  +K K YHCGQNGH
Subjt:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH

A0A5D3DK93 Gag/pol protein2.6e-3080.65Show/hide
Query:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH
        NASLNKIEFN+T LLNELQ FQT T+GK K+VEANVATTK KF RGSSSKNKTGPS P  Q+KKKGKGKTPK +KGKK A+KGK YHCGQNGH
Subjt:  NASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACGCGTCACTGAATAAGATAGAGTTCAACTTGACCACTCTTCTCAATGAGCTCCAATGGTTCCAAACTTTTACTTTGGGTAAGGGAAAGGAAGTGGAAGCAAATGT
TGCTACCACTAAAAAGAAGTTTTTAAGAGGATCGTCCTCTAAAAACAAAACTGGACCTTCAAATCCAAATGCTCAAATGAAAAAGAAGGGTAAAGGGAAGACTCCCAAGA
CGAGCAAGGGAAAGAAAGTTGCAAAAAAAGGTAAACGTTACCACTGCGGTCAGAATGGGCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACGCGTCACTGAATAAGATAGAGTTCAACTTGACCACTCTTCTCAATGAGCTCCAATGGTTCCAAACTTTTACTTTGGGTAAGGGAAAGGAAGTGGAAGCAAATGT
TGCTACCACTAAAAAGAAGTTTTTAAGAGGATCGTCCTCTAAAAACAAAACTGGACCTTCAAATCCAAATGCTCAAATGAAAAAGAAGGGTAAAGGGAAGACTCCCAAGA
CGAGCAAGGGAAAGAAAGTTGCAAAAAAAGGTAAACGTTACCACTGCGGTCAGAATGGGCACTAG
Protein sequenceShow/hide protein sequence
MNASLNKIEFNLTTLLNELQWFQTFTLGKGKEVEANVATTKKKFLRGSSSKNKTGPSNPNAQMKKKGKGKTPKTSKGKKVAKKGKRYHCGQNGH