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PI0002998 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002998
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr09:8194756..8197297
RNA-Seq ExpressionPI0002998
SyntenyPI0002998
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036791.1 retrotransposon protein [Cucumis melo var. makuwa]3.9e-3044.63Show/hide
Query:  KVVVPEPSSLKDSFKSHLVVKGFLNKLFPYYDNLCY--------------FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSK
        K ++ E     +  KSH   KG LNKLF +YD L Y              F D+GSN P GY+ F  D   D D   MYSQ  +MS DD+MGTR  R+S+
Subjt:  KVVVPEPSSLKDSFKSHLVVKGFLNKLFPYYDNLCY--------------FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSK

Query:  GRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERVFCAEVVRQLQGVPELSTYDRVHLMRIL
         R  SS SKRKR G  +++  I+R A+++ NE+L  I EWP LQRQD      E++RQL+ +PEL+  DR  LM IL
Subjt:  GRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERVFCAEVVRQLQGVPELSTYDRVHLMRIL

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-3145.76Show/hide
Query:  KVVVPEPSSLKDSFKSHLVVKGFLNKLFPYYDNLCY--------------FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSK
        K ++ E     D  KSH   KG LNK F +YD L Y              F D+GSN P GY+ F  DD +D D   MYS   +MS DD+M TR  R+S+
Subjt:  KVVVPEPSSLKDSFKSHLVVKGFLNKLFPYYDNLCY--------------FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSK

Query:  GRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERVFCAEVVRQLQGVPELSTYDRVHLMRIL
         R  SSGSKRKR G   ++ +I+R AM++ NE+L  I EWP LQRQD      E+VRQL+ +PEL+  DR  LMRI+
Subjt:  GRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERVFCAEVVRQLQGVPELSTYDRVHLMRIL

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-3246.33Show/hide
Query:  KVVVPEPSSLKDSFKSHLVVKGFLNKLFPYYDNLCY--------------FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSK
        K +V E     D  +SH   KG LNK FP+YD L Y              F DVGSN P GY+ F  +  +D D   MYS+  +MS D++MGTR  R+S+
Subjt:  KVVVPEPSSLKDSFKSHLVVKGFLNKLFPYYDNLCY--------------FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSK

Query:  GRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERVFCAEVVRQLQGVPELSTYDRVHLMRIL
        GR  SSGSK+KRGG  +++ +I+R A+++ NE+L  I EW  LQRQD      EVVRQL+ +PEL+  DR  LMRIL
Subjt:  GRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERVFCAEVVRQLQGVPELSTYDRVHLMRIL

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]9.9e-4271.65Show/hide
Query:  FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSKGRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERV
        FTDVGSN P GYEGF  DDGNDM+I MMYSQ  DM  DDIMGTRPDR ++GRTGSSGSKRK+GGQ VET+EIIRN M+ +N++LKAIVEW N+QRQD   
Subjt:  FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSKGRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERV

Query:  FCAEVVRQLQGVPELSTYDRVHLMRIL
           EVVRQLQ +PELS YDRV  M+IL
Subjt:  FCAEVVRQLQGVPELSTYDRVHLMRIL

XP_031744343.1 uncharacterized protein LOC116404989 [Cucumis sativus]2.5e-2945.3Show/hide
Query:  SSSAKVVVPEPSSLKDSFKSHLVVKGFLNKLFPYYDNLCY--------------FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPD
        +   K +V E     +  +SH   KG LNKLFPYYD L Y              F DVGSNVP G+E F   D NDM+   M S R +MS DDI   RP 
Subjt:  SSSAKVVVPEPSSLKDSFKSHLVVKGFLNKLFPYYDNLCY--------------FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPD

Query:  RLSKGRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERVFCAEVVRQLQGVPELSTYDRVHLMRIL
        R +  RT SSGSKR+RGGQ +ET ++I++AM    ++L+ I EWP L  +DE     EVVR L+ +PELS  D     RIL
Subjt:  RLSKGRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERVFCAEVVRQLQGVPELSTYDRVHLMRIL

TrEMBL top hitse value%identityAlignment
A0A5A7TYQ6 Retrotransposon protein1.0e-3145.76Show/hide
Query:  KVVVPEPSSLKDSFKSHLVVKGFLNKLFPYYDNLCY--------------FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSK
        K ++ E     D  KSH   KG LNK F +YD L Y              F D+GSN P GY+ F  DD +D D   MYS   +MS DD+M TR  R+S+
Subjt:  KVVVPEPSSLKDSFKSHLVVKGFLNKLFPYYDNLCY--------------FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSK

Query:  GRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERVFCAEVVRQLQGVPELSTYDRVHLMRIL
         R  SSGSKRKR G   ++ +I+R AM++ NE+L  I EWP LQRQD      E+VRQL+ +PEL+  DR  LMRI+
Subjt:  GRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERVFCAEVVRQLQGVPELSTYDRVHLMRIL

A0A5A7TZA5 Retrotransposon protein1.2e-3246.33Show/hide
Query:  KVVVPEPSSLKDSFKSHLVVKGFLNKLFPYYDNLCY--------------FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSK
        K +V E     D  +SH   KG LNK FP+YD L Y              F DVGSN P GY+ F  +  +D D   MYS+  +MS D++MGTR  R+S+
Subjt:  KVVVPEPSSLKDSFKSHLVVKGFLNKLFPYYDNLCY--------------FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSK

Query:  GRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERVFCAEVVRQLQGVPELSTYDRVHLMRIL
        GR  SSGSK+KRGG  +++ +I+R A+++ NE+L  I EW  LQRQD      EVVRQL+ +PEL+  DR  LMRIL
Subjt:  GRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERVFCAEVVRQLQGVPELSTYDRVHLMRIL

A0A5A7U7R0 Retrotransposon protein1.6e-2944.07Show/hide
Query:  KVVVPEPSSLKDSFKSHLVVKGFLNKLFPYYDNLCY--------------FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSK
        K +V E     D  KSH   KG LNK F +YD L Y              F D+G N P  Y+ F  D   D D   MYSQ  +MS DD+MGTR  R+S+
Subjt:  KVVVPEPSSLKDSFKSHLVVKGFLNKLFPYYDNLCY--------------FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSK

Query:  GRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERVFCAEVVRQLQGVPELSTYDRVHLMRIL
         R   SGSKRKR G   ++ +I+R A+++ NE++  I EWP LQRQD      E+VRQL+ +PEL+  DR  LM IL
Subjt:  GRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERVFCAEVVRQLQGVPELSTYDRVHLMRIL

A0A5A7V469 Retrotransposon protein4.8e-4271.65Show/hide
Query:  FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSKGRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERV
        FTDVGSN P GYEGF  DDGNDM+I MMYSQ  DM  DDIMGTRPDR ++GRTGSSGSKRK+GGQ VET+EIIRN M+ +N++LKAIVEW N+QRQD   
Subjt:  FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSKGRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERV

Query:  FCAEVVRQLQGVPELSTYDRVHLMRIL
           EVVRQLQ +PELS YDRV  M+IL
Subjt:  FCAEVVRQLQGVPELSTYDRVHLMRIL

A0A5D3BC43 Retrotransposon protein1.9e-3044.63Show/hide
Query:  KVVVPEPSSLKDSFKSHLVVKGFLNKLFPYYDNLCY--------------FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSK
        K ++ E     +  KSH   KG LNKLF +YD L Y              F D+GSN P GY+ F  D   D D   MYSQ  +MS DD+MGTR  R+S+
Subjt:  KVVVPEPSSLKDSFKSHLVVKGFLNKLFPYYDNLCY--------------FTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDIMGTRPDRLSK

Query:  GRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERVFCAEVVRQLQGVPELSTYDRVHLMRIL
         R  SS SKRKR G  +++  I+R A+++ NE+L  I EWP LQRQD      E++RQL+ +PEL+  DR  LM IL
Subjt:  GRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERVFCAEVVRQLQGVPELSTYDRVHLMRIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAAAGATTCAAAAGTATGTTGCTTACCAAATGATTTACCTATTGGTTCCAATGTTTTCTCTAAAGCTAAGGTACAAGATTGTGTATCTTCAAGTGCTAAGGTTGT
TGTTCCCGAGCCAAGCAGTCTCAAGGATAGTTTTAAGAGTCATCTTGTTGTCAAGGGCTTCCTAAACAAGCTATTTCCGTATTACGACAACCTGTGCTATTTCACCGATG
TGGGGTCGAATGTGCCTGGAGGGTACGAGGGATTTCTCACTGACGATGGAAACGATATGGATATCTCTATGATGTACAGTCAGAGACCAGACATGTCGCTTGACGACATC
ATGGGCACACGACCCGATCGCTTGAGTAAGGGTAGAACTGGTTCAAGCGGATCGAAAAGGAAGCGAGGAGGCCAGCCAGTAGAGACTGTGGAAATCATTCGCAATGCAAT
GGACTTCGCGAATGAGAAGCTGAAGGCCATTGTAGAGTGGCCAAATTTACAACGTCAAGATGAGCGCGTCTTTTGTGCAGAAGTCGTTAGACAGTTACAAGGGGTCCCTG
AACTAAGTACCTACGACAGGGTGCACCTTATGCGGATACTATGTGCAATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCAAAGATTCAAAAGTATGTTGCTTACCAAATGATTTACCTATTGGTTCCAATGTTTTCTCTAAAGCTAAGGTACAAGATTGTGTATCTTCAAGTGCTAAGGTTGT
TGTTCCCGAGCCAAGCAGTCTCAAGGATAGTTTTAAGAGTCATCTTGTTGTCAAGGGCTTCCTAAACAAGCTATTTCCGTATTACGACAACCTGTGCTATTTCACCGATG
TGGGGTCGAATGTGCCTGGAGGGTACGAGGGATTTCTCACTGACGATGGAAACGATATGGATATCTCTATGATGTACAGTCAGAGACCAGACATGTCGCTTGACGACATC
ATGGGCACACGACCCGATCGCTTGAGTAAGGGTAGAACTGGTTCAAGCGGATCGAAAAGGAAGCGAGGAGGCCAGCCAGTAGAGACTGTGGAAATCATTCGCAATGCAAT
GGACTTCGCGAATGAGAAGCTGAAGGCCATTGTAGAGTGGCCAAATTTACAACGTCAAGATGAGCGCGTCTTTTGTGCAGAAGTCGTTAGACAGTTACAAGGGGTCCCTG
AACTAAGTACCTACGACAGGGTGCACCTTATGCGGATACTATGTGCAATGTGA
Protein sequenceShow/hide protein sequence
MFKDSKVCCLPNDLPIGSNVFSKAKVQDCVSSSAKVVVPEPSSLKDSFKSHLVVKGFLNKLFPYYDNLCYFTDVGSNVPGGYEGFLTDDGNDMDISMMYSQRPDMSLDDI
MGTRPDRLSKGRTGSSGSKRKRGGQPVETVEIIRNAMDFANEKLKAIVEWPNLQRQDERVFCAEVVRQLQGVPELSTYDRVHLMRILCAM