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PI0003010 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003010
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptiontranslation initiation factor IF-1, chloroplastic-like
Genome locationchr07:22066650..22067081
RNA-Seq ExpressionPI0003010
SyntenyPI0003010
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold
IPR022967 - RNA-binding domain, S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064332.1 translation initiation factor IF-1 [Cucumis melo var. makuwa]7.6e-5079.02Show/hide
Query:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSS NLLQFPLLQSHFRPPSTLLFP +KSHLSV                          SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
Subjt:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSS KDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS

KAG6607876.1 Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.5e-4272.03Show/hide
Query:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSS NLLQFPLLQ   RPPST LFPAIKSHLSV                          SPK+++SEQK SHEGSV+ESLPNGMFRV+LDNEDLILGYIS
Subjt:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R STKD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS

XP_011654076.1 uncharacterized protein LOC101206284 [Cucumis sativus]1.9e-4877.62Show/hide
Query:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSS NLLQFPLLQSHFRPPSTLLFPA+KSHLS+                          SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDN+DLILGYIS
Subjt:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+R STKDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS

XP_022940969.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata]3.4e-4271.33Show/hide
Query:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSS NLLQFPLLQ   RPPST LFPAIKSH+SV                          SPK+++SEQK SHEGSV+ESLPNGMFRV+LDNEDLILGYIS
Subjt:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R STKD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS

XP_038899010.1 translation initiation factor IF-1, chloroplastic [Benincasa hispida]4.9e-4978.32Show/hide
Query:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSS  LLQFPLLQSHFRPPSTL FPA+KSHLSV                          SPKNDTSEQK SHEGSVVESLPNGMFRVRLDNEDLILGYIS
Subjt:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS

TrEMBL top hitse value%identityAlignment
A0A0A0L4Q7 S1-like domain-containing protein9.0e-4977.62Show/hide
Query:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSS NLLQFPLLQSHFRPPSTLLFPA+KSHLS+                          SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDN+DLILGYIS
Subjt:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+R STKDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS

A0A5A7V7J3 Translation initiation factor IF-13.7e-5079.02Show/hide
Query:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSS NLLQFPLLQSHFRPPSTLLFP +KSHLSV                          SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
Subjt:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSS KDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS

A0A6J1CD60 uncharacterized protein LOC1110104612.4e-4167.33Show/hide
Query:  MSSANLLQFPLL-QSHFRPP------STLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNED
        M++ N LQFPLL  +H RPP      STLLFP+++SH SV                          SPK+D+SEQK SHEGSV ESLPNGMFRVRLDNED
Subjt:  MSSANLLQFPLL-QSHFRPP------STLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYRLRSSTKDSSS
Subjt:  LILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like1.7e-4271.33Show/hide
Query:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSS NLLQFPLLQ   RPPST LFPAIKSH+SV                          SPK+++SEQK SHEGSV+ESLPNGMFRV+LDNEDLILGYIS
Subjt:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R STKD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS

A0A6J1IP00 uncharacterized protein LOC1114769472.4e-4170.29Show/hide
Query:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSS NLL+FPLL  H RPPSTL FPAIKSHLSV                           PK+D++EQK S+EGS+VESLPNGMFRVRLDNEDLILGYI 
Subjt:  MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSV--------------------------SPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSST
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSST
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSST

SwissProt top hitse value%identityAlignment
A6MMF7 Translation initiation factor IF-1, chloroplastic5.0e-2877.63Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSS
        EQKL HEG + ESLPNGMFRVRLDNEDLILGY+SG+IR++F+RILPGDRV++EVSRYDST+GRI+YRLR+  KDS+
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSS

A6MMP2 Translation initiation factor IF-1, chloroplastic1.0e-2878.95Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSS
        EQKL HEG ++ESLPNGMFRVRLDNEDLILGY+SG+IR++F+RILPGDRV++EVSRYDSTKGRI+YRLR+  KDS+
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSS

Q0G9I4 Translation initiation factor IF-1, chloroplastic5.0e-2877.63Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSS
        EQKL HEG + ESLPNGMFRVRLDNEDLILGY+SG+IR++F+RILPGDRV++EVSRYDST+GRI+YRLR+  KDS+
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSS

Q94KR7 Translation initiation factor IF-1, chloroplastic1.1e-3069.7Show/hide
Query:  SHFRPPSTLLFPAIKSHLSVSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSST
        S   PP  L      S  S +  + + EQK  HEG ++ESLPNGMFRVRLDNEDLILGYISGKIRKN+VRILPGDRV+VEV+RYDS+KGRIVYRLRSST
Subjt:  SHFRPPSTLLFPAIKSHLSVSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSST

Q95GN5 Translation initiation factor IF-1, chloroplastic2.2e-2877.63Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSS
        EQKL HEG ++ESLPNGMFRVRLDNEDLILGY+SG+IR++F+RILPGDRV++EVSRYDST+GRI+YRLR+  KDS+
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSS

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein5.5e-2265.79Show/hide
Query:  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRS
        P+      K   EG V ESLPNGMFRV L+N D ILGYI GKIRKNF+RILPGD+V+VE+S YDSTKGRI++R+ S
Subjt:  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGCGCAAATCTCCTCCAATTCCCTCTCCTTCAATCCCACTTCCGGCCACCATCCACTCTCCTTTTTCCCGCCATCAAATCCCATCTCTCCGTCTCTCCAAAAAA
CGACACCTCCGAGCAGAAATTGAGCCATGAAGGCTCCGTCGTTGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTCATTCTAGGCTACATAT
CCGGTAAGATTCGGAAGAATTTTGTTCGTATTTTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGTCGTTATGATTCTACCAAAGGCCGAATTGTTTATAGACTTCGAAGT
AGTACTAAAGATTCATCTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGCGCAAATCTCCTCCAATTCCCTCTCCTTCAATCCCACTTCCGGCCACCATCCACTCTCCTTTTTCCCGCCATCAAATCCCATCTCTCCGTCTCTCCAAAAAA
CGACACCTCCGAGCAGAAATTGAGCCATGAAGGCTCCGTCGTTGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTCATTCTAGGCTACATAT
CCGGTAAGATTCGGAAGAATTTTGTTCGTATTTTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGTCGTTATGATTCTACCAAAGGCCGAATTGTTTATAGACTTCGAAGT
AGTACTAAAGATTCATCTTCATGA
Protein sequenceShow/hide protein sequence
MSSANLLQFPLLQSHFRPPSTLLFPAIKSHLSVSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRS
STKDSSS