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PI0003035 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003035
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein
Genome locationchr04:23267718..23268020
RNA-Seq ExpressionPI0003035
SyntenyPI0003035
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021603241.1 uncharacterized protein LOC110608326 [Manihot esculenta]4.7e-2567.9Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN
        DKAK+DVI+ LPYPTC++D+RSFLG AGFYRRFIKDFS+IA PL  LLQKDVPF  D++C++A N LK++LV+  I+Q+PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN

XP_027343093.1 uncharacterized protein LOC113855660 [Abrus precatorius]1.2e-2363.1Show/hide
Query:  VSHDKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN
        ++ D +KIDVI  LPYPTC+++VRSFLG AGFYRRFI+ FSKI LPL+ LLQKD+ F  DD+C++A ++LKQ L+S  +LQSPN
Subjt:  VSHDKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN

XP_028797073.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114752508 [Prosopis alba]1.4e-2471.6Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN
        DKAKID+I  LPYP+C+KDVRSFLG AGFYRRFI+DFSKIALPL+ LLQKDV FV DD C+ A +ELK+RL +  I+Q PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN

XP_028798815.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114754213 [Prosopis alba]1.4e-2471.6Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN
        DKAKID+I  LPYP+C+KDVRSFLG AGFYRRFI+DFSKIALPL+ LLQKDV FV DD C+ A +ELK+RL +  I+Q PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN

XP_028802716.1 uncharacterized protein LOC114757797 [Prosopis alba]1.0e-2471.6Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN
        DKAKID+I  LPYP+C+KDVRSFLG AGFYRRFI+DFSKIALPL+ LLQKDV FV DD C+ A +ELK+RL +  I+Q PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN

TrEMBL top hitse value%identityAlignment
A0A0L9TXH6 Reverse transcriptase8.1e-2364.2Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN
        D AKI VI +LPYP+C+++VRSFLG AGFYRRFIKDFSK  LPL+ LLQKD+ F  DD+CK+A + LKQ L++T I+Q+P+
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN

A0A151QL68 Transposon Ty3-G Gag-Pol polyprotein2.1e-2367.9Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN
        DKAKI+VI  LPYPTC+K++RSFLG AGFYRRFIKDFSKIA PL+ LLQKD  F  ++ C+ A +ELK RLVS  IL +PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN

A0A2K3NDP5 RT_RNaseH_2 domain-containing protein (Fragment)4.7e-2367.9Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN
        D AKI+V   LPYP+C+ ++RSFLG AGFY RFIKDFSKIALPL++LLQKDV F  DDKCKKA + LK  L ST I+Q PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN

A0A2U1NRI2 Reverse transcriptase4.7e-2367.9Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN
        DKAK+DVI KLP PT +K +RSFLG AGFYRRFIKDFSKIA PLT LL+KD+PF  DD+C+KA   LK++L  T I+ SPN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN

A0A392MXJ5 Uncharacterized protein (Fragment)7.3e-2466.67Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN
        D AKIDVI  LP+PTC++++RSFLG AGFYRRFIKDFSKIALPL++LLQKD+ F  DDKCK+A + LK+ L ST ++Q P+
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN

SwissProt top hitse value%identityAlignment
P03359 Gag-Pol polyprotein3.7e-0936.71Show/hide
Query:  AKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN
        A+   + K+P PT  + VR FLG+AGF R +I  F+ +A PL  L ++ +PF+  ++ +KA + +K+ L+S   L  P+
Subjt:  AKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN

P10394 Retrovirus-related Pol polyprotein from transposon 4123.1e-1140.74Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN
        D  K DVIQ  P P      R F+    +YRRFIK+F+  +  +T L +K+VPF   D+C+KA   LK +L++ ++LQ P+
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN

P10401 Retrovirus-related Pol polyprotein from transposon gypsy6.4e-0936.36Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQ-----------KDVPFVIDDKCKKALNELKQRLVSTSIL
        D  K+  IQ+ P P C+  VRSFLG A +YR FIKDF+ IA P+T +L+           K +P   ++  + A   L+  L S  ++
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQ-----------KDVPFVIDDKCKKALNELKQRLVSTSIL

P21414 Gag-Pol polyprotein8.4e-0935.44Show/hide
Query:  AKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN
        A+   + K+P PT  + VR FLG+AGF R +I  F+ +A PL  L ++ +PF+  ++ ++A + +K+ L+S   L  P+
Subjt:  AKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.2e-1034.04Show/hide
Query:  VSHDKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQ-----------KDVPFVIDDKCKKALNELKQRLVSTSILQSP
        +  D  K+  I ++P PT +K+++ FLG   +YR+FI+D++K+A PLT+L +             VP  +D+   ++ N+LK  L S+ IL  P
Subjt:  VSHDKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQ-----------KDVPFVIDDKCKKALNELKQRLVSTSILQSP

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.5e-0846.3Show/hide
Query:  VSHDKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKD
        VS D AK++ +   P P    ++R FLG  G+YRRF+K++ KI  PLT LL+K+
Subjt:  VSHDKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATCACATGATAAAGCAAAAATTGATGTTATTCAAAAATTACCATATCCTACTTGTTTAAAAGATGTTAGATCTTTCCTTGGTAGTGCCGGCTTTTATAGAAGGTT
TATTAAGGATTTTTCTAAAATTGCTTTACCTCTAACTTCTCTCTTACAAAAAGATGTGCCATTTGTGATTGATGACAAATGTAAAAAGGCATTGAATGAACTTAAGCAAA
GGTTAGTTTCTACTTCTATCCTTCAATCTCCTAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTATCACATGATAAAGCAAAAATTGATGTTATTCAAAAATTACCATATCCTACTTGTTTAAAAGATGTTAGATCTTTCCTTGGTAGTGCCGGCTTTTATAGAAGGTT
TATTAAGGATTTTTCTAAAATTGCTTTACCTCTAACTTCTCTCTTACAAAAAGATGTGCCATTTGTGATTGATGACAAATGTAAAAAGGCATTGAATGAACTTAAGCAAA
GGTTAGTTTCTACTTCTATCCTTCAATCTCCTAATTAG
Protein sequenceShow/hide protein sequence
MVSHDKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKALNELKQRLVSTSILQSPN