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PI0003041 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003041
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 297 family
Genome locationchr09:14471115..14476850
RNA-Seq ExpressionPI0003041
SyntenyPI0003041
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041704.1 uncharacterized protein E6C27_scaffold67G00370 [Cucumis melo var. makuwa]7.6e-2058.82Show/hide
Query:  ESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHA--RNLATSNEHDLGRNIENND----KQIGIGNVLN
        ESL+T E+HDKFNEL+DQ TLEYV+ EFAK + +DDD S FLDF  S+N+EHAL+DN  T  HHA   + A+SNEH LGRNI N++    K I I N L 
Subjt:  ESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHA--RNLATSNEHDLGRNIENND----KQIGIGNVLN

Query:  IN
         N
Subjt:  IN

KAA0042324.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa]1.2e-3054.79Show/hide
Query:  ESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHARN-LATSNEHDLGRNIENND----KQIGIGNVLNI
        ESL+ LE+HDKFNEL+DQATLE+V+ EFAK + +DDDLS FLDFVTS+N+E+ L+DN  T EH   N   +SNEHD GRNI+++     K I I N  + 
Subjt:  ESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHARN-LATSNEHDLGRNIENND----KQIGIGNVLNI

Query:  NSHLENLKKEN----ESCEIDLHKECETFDSNELTLPMQEKEIELK
        + H++N +KEN    + CE+ LHKECE+ ++NELT P+QE  I+LK
Subjt:  NSHLENLKKEN----ESCEIDLHKECETFDSNELTLPMQEKEIELK

KAA0063162.1 hypothetical protein E6C27_scaffold381G00430 [Cucumis melo var. makuwa]1.4e-2152.94Show/hide
Query:  LRCAESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHA--RNLATSNEHDLGRNIENND----KQIGIG
        L   ESLETLEKHD+F+EL+DQATLEYV+ EFAK + +DDD+S FLDF  S+N+EH L+DN  T E H    + A SNEHDLGRNI+++D    K IGI 
Subjt:  LRCAESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHA--RNLATSNEHDLGRNIENND----KQIGIG

Query:  NVLNINSHLENLKKENESC
        N  + + H++       +C
Subjt:  NVLNINSHLENLKKENESC

KAA0066481.1 Retrotransposon gag protein [Cucumis melo var. makuwa]6.2e-2261.39Show/hide
Query:  ESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHARN-LATSNEHDLGRNIENND----KQIGIGNVLNI
        ESL+TL++HD+FN+L++QATLEY+D EFAK + +DDDLS FLDFV S+N+EH L+DN  T EH   N  A+SNEHDLGRNI N+D    K I I N L I
Subjt:  ESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHARN-LATSNEHDLGRNIENND----KQIGIGNVLNI

Query:  N
        N
Subjt:  N

KAE8647060.1 hypothetical protein Csa_022980 [Cucumis sativus]8.6e-3257.24Show/hide
Query:  ESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHA--RNLATSNEHDLGRNIENNDKQ----IGIGNVLN
        ESLETLE+ DK NEL+DQATLEYVD EF+KE+ +DDDLS FL+FV SIN+EHAL+DN TT + HA   N A+S E DLGR+I++ D+Q    I I N  +
Subjt:  ESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHA--RNLATSNEHDLGRNIENNDKQ----IGIGNVLN

Query:  INSHLENLKK-----ENESCEIDLHKECETF----DSNELTLPMQEKEIELK
         + H+  LKK     EN+ CE+ LHKECE F    +SNELTLP+Q+  IE+K
Subjt:  INSHLENLKK-----ENESCEIDLHKECETF----DSNELTLPMQEKEIELK

TrEMBL top hitse value%identityAlignment
A0A5A7TE46 Uncharacterized protein3.7e-2058.82Show/hide
Query:  ESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHA--RNLATSNEHDLGRNIENND----KQIGIGNVLN
        ESL+T E+HDKFNEL+DQ TLEYV+ EFAK + +DDD S FLDF  S+N+EHAL+DN  T  HHA   + A+SNEH LGRNI N++    K I I N L 
Subjt:  ESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHA--RNLATSNEHDLGRNIENND----KQIGIGNVLN

Query:  IN
         N
Subjt:  IN

A0A5A7V4I7 Uncharacterized protein6.7e-2252.94Show/hide
Query:  LRCAESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHA--RNLATSNEHDLGRNIENND----KQIGIG
        L   ESLETLEKHD+F+EL+DQATLEYV+ EFAK + +DDD+S FLDF  S+N+EH L+DN  T E H    + A SNEHDLGRNI+++D    K IGI 
Subjt:  LRCAESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHA--RNLATSNEHDLGRNIENND----KQIGIG

Query:  NVLNINSHLENLKKENESC
        N  + + H++       +C
Subjt:  NVLNINSHLENLKKENESC

A0A5D3CW21 Retrovirus-related Pol polyprotein from transposon 297 family6.0e-3154.79Show/hide
Query:  ESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHARN-LATSNEHDLGRNIENND----KQIGIGNVLNI
        ESL+ LE+HDKFNEL+DQATLE+V+ EFAK + +DDDLS FLDFVTS+N+E+ L+DN  T EH   N   +SNEHD GRNI+++     K I I N  + 
Subjt:  ESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHARN-LATSNEHDLGRNIENND----KQIGIGNVLNI

Query:  NSHLENLKKEN----ESCEIDLHKECETFDSNELTLPMQEKEIELK
        + H++N +KEN    + CE+ LHKECE+ ++NELT P+QE  I+LK
Subjt:  NSHLENLKKEN----ESCEIDLHKECETFDSNELTLPMQEKEIELK

A0A5D3D5G7 Uncharacterized protein3.7e-2053.77Show/hide
Query:  ETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHA--RNLATSNEHDLGRNIENNDKQI--GIGNVLNINSHL
        ET E+HDKFNEL DQATL++V+YEFAK + ++DDLS FLDFV S+N+EH L+DN  T  HH    + A+SNEHDLGRNI N+D+    GI N  ++ +++
Subjt:  ETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHA--RNLATSNEHDLGRNIENNDKQI--GIGNVLNINSHL

Query:  ENLKKE
          +  E
Subjt:  ENLKKE

A0A5D3DU65 Retrotransposon gag protein3.0e-2261.39Show/hide
Query:  ESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHARN-LATSNEHDLGRNIENND----KQIGIGNVLNI
        ESL+TL++HD+FN+L++QATLEY+D EFAK + +DDDLS FLDFV S+N+EH L+DN  T EH   N  A+SNEHDLGRNI N+D    K I I N L I
Subjt:  ESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHARN-LATSNEHDLGRNIENND----KQIGIGNVLNI

Query:  N
        N
Subjt:  N

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAAATGGAGTTAGGGCAAAAAACTGCCAAATTGCAGTTTATTTGGGGAAGAAAGGTGAAGCGGGTCGCATGTGGGTCACTGGGTCAGAACTTAGATGCGCAGA
ATCTTTGGAAACTTTAGAAAAGCATGATAAATTCAATGAACTTTTAGATCAAGCAACTCTAGAGTATGTTGATTATGAATTTGCTAAGGAGAGATCTAATGATGATGATC
TTTCTACCTTCCTTGATTTTGTTACTAGTATAAATGAAGAGCATGCTTTAATTGATAATTTTACAACCCTTGAACATCATGCTAGAAATCTTGCAACTAGTAATGAACAT
GACTTAGGAAGAAATATTGAGAATAATGATAAGCAAATAGGCATTGGCAATGTTCTAAACATAAACTCCCACTTGGAAAACCTTAAAAAAGAGAATGAATCTTGTGAAAT
AGATTTGCATAAAGAATGTGAAACTTTCGATTCTAATGAACTTACTTTACCTATGCAGGAAAAAGAGATTGAACTCAAGAAAGGCAAAGAGAGGAAAAGTAGGCGATCAA
CATTGCATTTAGACGATCAAAAGAGCATCTGGCGAACAACCAGTACAACACTATGCGATGCTAATTCGCTAAAGACAAGAATGGTAGTTGGAGATGATGTGACTATTCTG
AAATGCTTTCGACGCGAGAAGGACACTGTACAAAAGAGCATTAAATGCGTCCTGCCAAGAGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAAAATGGAGTTAGGGCAAAAAACTGCCAAATTGCAGTTTATTTGGGGAAGAAAGGTGAAGCGGGTCGCATGTGGGTCACTGGGTCAGAACTTAGATGCGCAGA
ATCTTTGGAAACTTTAGAAAAGCATGATAAATTCAATGAACTTTTAGATCAAGCAACTCTAGAGTATGTTGATTATGAATTTGCTAAGGAGAGATCTAATGATGATGATC
TTTCTACCTTCCTTGATTTTGTTACTAGTATAAATGAAGAGCATGCTTTAATTGATAATTTTACAACCCTTGAACATCATGCTAGAAATCTTGCAACTAGTAATGAACAT
GACTTAGGAAGAAATATTGAGAATAATGATAAGCAAATAGGCATTGGCAATGTTCTAAACATAAACTCCCACTTGGAAAACCTTAAAAAAGAGAATGAATCTTGTGAAAT
AGATTTGCATAAAGAATGTGAAACTTTCGATTCTAATGAACTTACTTTACCTATGCAGGAAAAAGAGATTGAACTCAAGAAAGGCAAAGAGAGGAAAAGTAGGCGATCAA
CATTGCATTTAGACGATCAAAAGAGCATCTGGCGAACAACCAGTACAACACTATGCGATGCTAATTCGCTAAAGACAAGAATGGTAGTTGGAGATGATGTGACTATTCTG
AAATGCTTTCGACGCGAGAAGGACACTGTACAAAAGAGCATTAAATGCGTCCTGCCAAGAGCATAA
Protein sequenceShow/hide protein sequence
MEKNGVRAKNCQIAVYLGKKGEAGRMWVTGSELRCAESLETLEKHDKFNELLDQATLEYVDYEFAKERSNDDDLSTFLDFVTSINEEHALIDNFTTLEHHARNLATSNEH
DLGRNIENNDKQIGIGNVLNINSHLENLKKENESCEIDLHKECETFDSNELTLPMQEKEIELKKGKERKSRRSTLHLDDQKSIWRTTSTTLCDANSLKTRMVVGDDVTIL
KCFRREKDTVQKSIKCVLPRA