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PI0003042 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003042
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr04:19592666..19592926
RNA-Seq ExpressionPI0003042
SyntenyPI0003042
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033059.1 uncharacterized protein E6C27_scaffold269G001710 [Cucumis melo var. makuwa]7.8e-2069.41Show/hide
Query:  MSQGEGVPQVEDSTVAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNLMQPRRVERV
        MSQGEGVPQ++D T+A+LQ IQG++E+M ED+QERR Q Q EE+ LQE E+ +DLVEQERQVG  GN+RGRGRNN MQ RRV+RV
Subjt:  MSQGEGVPQVEDSTVAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNLMQPRRVERV

KAA0047357.1 uncharacterized protein E6C27_scaffold754G00030 [Cucumis melo var. makuwa]2.5e-1881.43Show/hide
Query:  VAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNLMQPRRVER
        +AILQ IQGMM+ +R+DRQERR QQQREE+VLQE EE IDLVEQERQVGGR NMRG+GRNNLMQPRR+ER
Subjt:  VAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNLMQPRRVER

TYK21797.1 uncharacterized protein E5676_scaffold991G00010 [Cucumis melo var. makuwa]2.1e-1768.24Show/hide
Query:  GEGVPQVEDSTVAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNL---MQPRRVERV
        GE VP+V D  VAILQ IQGM+E+MRE+RQERR QQQRE ++ QE E   DL   ERQ+GGRGNMRGRGRNNL   MQPRR+E+V
Subjt:  GEGVPQVEDSTVAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNL---MQPRRVERV

XP_016902063.1 PREDICTED: uncharacterized protein LOC107991521 [Cucumis melo]2.5e-1881.43Show/hide
Query:  VAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNLMQPRRVER
        +AILQ IQGMM+ +R+DRQERR QQQREE+VLQE EE IDLVEQERQVGGR NMRG+GRNNLMQPRR+ER
Subjt:  VAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNLMQPRRVER

XP_038902315.1 LOW QUALITY PROTEIN: uncharacterized protein LOC120088948 [Benincasa hispida]6.6e-1972.94Show/hide
Query:  MSQGEGVPQVEDSTVAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNLMQPRRVERV
        MSQGE VPQV+D+ +AILQ IQGMME+MREDRQERR QQQR   V QE E  IDLVEQERQ+ G+GNMRG+GRNN M PRR ER+
Subjt:  MSQGEGVPQVEDSTVAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNLMQPRRVERV

TrEMBL top hitse value%identityAlignment
A0A1S4E1G3 uncharacterized protein LOC1079915211.2e-1881.43Show/hide
Query:  VAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNLMQPRRVER
        +AILQ IQGMM+ +R+DRQERR QQQREE+VLQE EE IDLVEQERQVGGR NMRG+GRNNLMQPRR+ER
Subjt:  VAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNLMQPRRVER

A0A5A7TZH9 Retrotrans_gag domain-containing protein1.2e-1881.43Show/hide
Query:  VAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNLMQPRRVER
        +AILQ IQGMM+ +R+DRQERR QQQREE+VLQE EE IDLVEQERQVGGR NMRG+GRNNLMQPRR+ER
Subjt:  VAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNLMQPRRVER

A0A5A7VII0 Uncharacterized protein3.0e-1768.24Show/hide
Query:  GEGVPQVEDSTVAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNL---MQPRRVERV
        GE VP+V D  VAILQ IQGM+E+MRE+RQERR QQQRE +  QE E   DL   ERQ+GGRGN+RGRGRNNL   MQPRR+ERV
Subjt:  GEGVPQVEDSTVAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNL---MQPRRVERV

A0A5D3BUV3 Uncharacterized protein3.8e-2069.41Show/hide
Query:  MSQGEGVPQVEDSTVAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNLMQPRRVERV
        MSQGEGVPQ++D T+A+LQ IQG++E+M ED+QERR Q Q EE+ LQE E+ +DLVEQERQVG  GN+RGRGRNN MQ RRV+RV
Subjt:  MSQGEGVPQVEDSTVAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNLMQPRRVERV

A0A5D3DDM5 Uncharacterized protein1.0e-1768.24Show/hide
Query:  GEGVPQVEDSTVAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNL---MQPRRVERV
        GE VP+V D  VAILQ IQGM+E+MRE+RQERR QQQRE ++ QE E   DL   ERQ+GGRGNMRGRGRNNL   MQPRR+E+V
Subjt:  GEGVPQVEDSTVAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNL---MQPRRVERV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACAGGGTGAAGGAGTACCACAAGTAGAAGATTCTACTGTGGCTATTCTTCAAGTCATTCAAGGAATGATGGAAATTATGAGGGAAGATAGGCAAGAAAGGAGGAC
ACAACAACAAAGAGAAGAACAAGTCTTGCAAGAATATGAAGAAGCGATTGATTTAGTTGAACAAGAAAGACAAGTTGGAGGAAGAGGAAACATGAGAGGAAGAGGAAGAA
ATAATCTTATGCAACCTCGTAGAGTTGAAAGAGTTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACAGGGTGAAGGAGTACCACAAGTAGAAGATTCTACTGTGGCTATTCTTCAAGTCATTCAAGGAATGATGGAAATTATGAGGGAAGATAGGCAAGAAAGGAGGAC
ACAACAACAAAGAGAAGAACAAGTCTTGCAAGAATATGAAGAAGCGATTGATTTAGTTGAACAAGAAAGACAAGTTGGAGGAAGAGGAAACATGAGAGGAAGAGGAAGAA
ATAATCTTATGCAACCTCGTAGAGTTGAAAGAGTTCAATGA
Protein sequenceShow/hide protein sequence
MSQGEGVPQVEDSTVAILQVIQGMMEIMREDRQERRTQQQREEQVLQEYEEAIDLVEQERQVGGRGNMRGRGRNNLMQPRRVERVQ