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PI0003058 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003058
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationchr12:1348000..1350092
RNA-Seq ExpressionPI0003058
SyntenyPI0003058
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN64205.1 hypothetical protein Csa_014029 [Cucumis sativus]5.1e-6362.67Show/hide
Query:  METQQIITLRNNTKRKIESRGMNRLLEEEAVDEILSFASAFPSHEDQAVDLLLDDITTQLTSND------------------------------------
        METQQ  TL+NNT+RKIE RGMNRLLEEEAVDEI+SFAS FPSHED AVDLLLD IT + TSN                                     
Subjt:  METQQIITLRNNTKRKIESRGMNRLLEEEAVDEILSFASAFPSHEDQAVDLLLDDITTQLTSND------------------------------------

Query:  ----------------TDSNVSDLLDSDDEEMWM-EVRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHI
                        TDSN  DLLD+DDEEMWM  VRQL LNDL+L+E FPFRAS STIQALPDVF   DFSSSW C VC++DEIEANDG KQLPCKHI
Subjt:  ----------------TDSNVSDLLDSDDEEMWM-EVRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHI

Query:  FHTHCIISWLELHNSCPLCRYQLPT
        FHTHCIISWLEL NSCPLCRYQLPT
Subjt:  FHTHCIISWLELHNSCPLCRYQLPT

TYJ99062.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]7.7e-5172.61Show/hide
Query:  METQQIITLRNNTKRKIESRGMNRLLEEEAVDEILSFASAFPSHEDQAVDLLLDDI--------TTQLTSNDTDSNVSDLLDSDDEEMWMEVRQLPLNDL
        ME QQIITLR NTKRKIESRGMNRLLEEEAVDEILSFAS FPSHED+AVDLLLDD         T +   + TDSNV+DLLD DD ++WM VRQL L+DL
Subjt:  METQQIITLRNNTKRKIESRGMNRLLEEEAVDEILSFASAFPSHEDQAVDLLLDDI--------TTQLTSNDTDSNVSDLLDSDDEEMWMEVRQLPLNDL

Query:  NLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHIFH
          + SFPF AS S IQALPDVFPTDDFSSSWAC VCMDDEI+A DG KQLP   I H
Subjt:  NLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHIFH

XP_008446033.1 PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucumis melo]1.4e-6865.75Show/hide
Query:  METQQIITLRNNTKRKIESRGMNRLLEEEAVDEILSFASAFPSHEDQAVDLLLDDITTQLTSND------------------------------------
        ME QQIITLR NTKRKIESRGMNRLLEEEAVDEILSFAS FPSHED+AVDLLLD ITT+LTSN                                     
Subjt:  METQQIITLRNNTKRKIESRGMNRLLEEEAVDEILSFASAFPSHEDQAVDLLLDDITTQLTSND------------------------------------

Query:  -----------TDSNVSDLLDSDDEEMWMEVRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCI
                   TDSNV+DLLD DD ++WM VRQL L+DL  + SFPF AS S IQALPDVFPTDDFSSSWAC VCMDDEI+A DG KQLPC+HIFHTHCI
Subjt:  -----------TDSNVSDLLDSDDEEMWMEVRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCI

Query:  ISWLELHNSCPLCRYQLPT
        ISWLELHNSCPLCRY+LPT
Subjt:  ISWLELHNSCPLCRYQLPT

XP_010487953.1 PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa]1.9e-1756.04Show/hide
Query:  VRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDF--SSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT
        ++QL  ND N Y + P  AS S I ALP V  T D   S    C VCM DE E   GVKQ+PCKH+FH  C++ WLELHNSCP+CRY+LPT
Subjt:  VRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDF--SSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT

XP_010508254.1 PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa]1.9e-1756.04Show/hide
Query:  VRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDF--SSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT
        ++QL  ND N Y + P  AS S I ALP V  T D   S    C VCM DE E   GVKQ+PCKH+FH  C++ WLELHNSCP+CRY+LPT
Subjt:  VRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDF--SSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT

TrEMBL top hitse value%identityAlignment
A0A0A0LQL0 RING-type domain-containing protein2.5e-6362.67Show/hide
Query:  METQQIITLRNNTKRKIESRGMNRLLEEEAVDEILSFASAFPSHEDQAVDLLLDDITTQLTSND------------------------------------
        METQQ  TL+NNT+RKIE RGMNRLLEEEAVDEI+SFAS FPSHED AVDLLLD IT + TSN                                     
Subjt:  METQQIITLRNNTKRKIESRGMNRLLEEEAVDEILSFASAFPSHEDQAVDLLLDDITTQLTSND------------------------------------

Query:  ----------------TDSNVSDLLDSDDEEMWM-EVRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHI
                        TDSN  DLLD+DDEEMWM  VRQL LNDL+L+E FPFRAS STIQALPDVF   DFSSSW C VC++DEIEANDG KQLPCKHI
Subjt:  ----------------TDSNVSDLLDSDDEEMWM-EVRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHI

Query:  FHTHCIISWLELHNSCPLCRYQLPT
        FHTHCIISWLEL NSCPLCRYQLPT
Subjt:  FHTHCIISWLELHNSCPLCRYQLPT

A0A1S3BES6 ERAD-associated E3 ubiquitin-protein ligase HRD1-like6.8e-6965.75Show/hide
Query:  METQQIITLRNNTKRKIESRGMNRLLEEEAVDEILSFASAFPSHEDQAVDLLLDDITTQLTSND------------------------------------
        ME QQIITLR NTKRKIESRGMNRLLEEEAVDEILSFAS FPSHED+AVDLLLD ITT+LTSN                                     
Subjt:  METQQIITLRNNTKRKIESRGMNRLLEEEAVDEILSFASAFPSHEDQAVDLLLDDITTQLTSND------------------------------------

Query:  -----------TDSNVSDLLDSDDEEMWMEVRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCI
                   TDSNV+DLLD DD ++WM VRQL L+DL  + SFPF AS S IQALPDVFPTDDFSSSWAC VCMDDEI+A DG KQLPC+HIFHTHCI
Subjt:  -----------TDSNVSDLLDSDDEEMWMEVRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCI

Query:  ISWLELHNSCPLCRYQLPT
        ISWLELHNSCPLCRY+LPT
Subjt:  ISWLELHNSCPLCRYQLPT

A0A5D3BH26 Pentatricopeptide repeat-containing protein3.7e-5172.61Show/hide
Query:  METQQIITLRNNTKRKIESRGMNRLLEEEAVDEILSFASAFPSHEDQAVDLLLDDI--------TTQLTSNDTDSNVSDLLDSDDEEMWMEVRQLPLNDL
        ME QQIITLR NTKRKIESRGMNRLLEEEAVDEILSFAS FPSHED+AVDLLLDD         T +   + TDSNV+DLLD DD ++WM VRQL L+DL
Subjt:  METQQIITLRNNTKRKIESRGMNRLLEEEAVDEILSFASAFPSHEDQAVDLLLDDI--------TTQLTSNDTDSNVSDLLDSDDEEMWMEVRQLPLNDL

Query:  NLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHIFH
          + SFPF AS S IQALPDVFPTDDFSSSWAC VCMDDEI+A DG KQLP   I H
Subjt:  NLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHIFH

A0A6J1EDR0 RING-type E3 ubiquitin transferase2.7e-1753.85Show/hide
Query:  VRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDF--SSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT
        ++QL  ND N Y + P  AS S+I+ALP++  T++   S S  C VC  D  E N+  KQ+PCKHI+H  CII WLELHNSCP+CRY+LPT
Subjt:  VRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDF--SSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT

A0A6J1KNN7 RING-type E3 ubiquitin transferase3.5e-1753.85Show/hide
Query:  VRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDF--SSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT
        ++QL  ND N Y + P  AS S I+ALP++  T++   S S  C VC  D  E N+  KQ+PCKHI+H  CII WLELHNSCP+CRY+LPT
Subjt:  VRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDF--SSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT

SwissProt top hitse value%identityAlignment
P0CH30 E3 ubiquitin-protein ligase RING17.6e-1750.55Show/hide
Query:  VRQLPLNDLNLYESFPFRASISTIQALPDVFPT-DDFSSSW-ACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT
        ++QL  ND N Y + P  AS S I+ALP V  T  + +S +  C VCMDD  E     KQ+PCKH++H  C++ WLELHNSCP+CR++LPT
Subjt:  VRQLPLNDLNLYESFPFRASISTIQALPDVFPT-DDFSSSW-ACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT

Q6AVN2 E3 ubiquitin-protein ligase SIRP15.1e-1343.53Show/hide
Query:  NLYESFPFR-----ASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT
        +L ES P R     A    ++ALP V          +C VC+DD +E     KQ+PC+H FH+ CI+ WLELH+SCP+CR++LP+
Subjt:  NLYESFPFR-----ASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT

Q6GPV5 E3 ubiquitin-protein ligase RNF1815.6e-1243.59Show/hide
Query:  ESFPFRASISTIQALPDVFPT-DDFSSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT
        +  P  AS   +++LP V  T +   ++  C VC+  E E  + V+QLPC+H+FH+ CI+ WL   NSCPLCR++LPT
Subjt:  ESFPFRASISTIQALPDVFPT-DDFSSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT

Q7ZW78 E3 ubiquitin-protein ligase RNF1819.6e-1242.31Show/hide
Query:  ESFPFRASISTIQALPDVFPTDDFSSSWA-CVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT
        +  P  A+ + +Q+LP V  + + +     C VC+  E E  + V+++PCKH+FHT CI+ WL   NSCPLCR +LPT
Subjt:  ESFPFRASISTIQALPDVFPTDDFSSSWA-CVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT

Q8LPN7 E3 ubiquitin-protein ligase RING1-like4.7e-1953.85Show/hide
Query:  VRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDF--SSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT
        ++QL  ND N Y + P  AS S I ALP V  T D   S    C VCM DE E    VKQ+PCKH+FH  C++ WLELHNSCP+CR++LPT
Subjt:  VRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDF--SSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT

Arabidopsis top hitse value%identityAlignment
AT3G13430.1 RING/U-box superfamily protein4.7e-1444.94Show/hide
Query:  VRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT
        +++L  NDLN     P  A+   ++AL  V   D   S   C VC+DD  E     K++PCKH FH+ C++ WLELH+SCP+CRY LPT
Subjt:  VRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT

AT3G19950.1 RING/U-box superfamily protein3.4e-2053.85Show/hide
Query:  VRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDF--SSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT
        ++QL  ND N Y + P  AS S I ALP V  T D   S    C VCM DE E    VKQ+PCKH+FH  C++ WLELHNSCP+CR++LPT
Subjt:  VRQLPLNDLNLYESFPFRASISTIQALPDVFPTDDF--SSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT

AT4G26400.1 RING/U-box superfamily protein7.3e-1543.9Show/hide
Query:  NDLNLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLP
        ND   + S P R  +       D  PT   S S  C +C+DD  +     K++PCKH FH  CI+ WLELH+SCP+CRY+LP
Subjt:  NDLNLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLP

AT4G26400.2 RING/U-box superfamily protein7.3e-1543.9Show/hide
Query:  NDLNLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLP
        ND   + S P R  +       D  PT   S S  C +C+DD  +     K++PCKH FH  CI+ WLELH+SCP+CRY+LP
Subjt:  NDLNLYESFPFRASISTIQALPDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLP

AT5G15820.1 RING/U-box superfamily protein4.3e-1538.16Show/hide
Query:  EEEAVDEILSFASAFPSHEDQAVDLLLDDITTQLTSNDTDSNVSDLLDSDDEEMWME----VRQLPLNDLNLYESFPFRASISTIQALPDVFPT-DDFSS
        EEE  + ++ FA++  S    A ++LL D  T     D D  V   LDS D    M+    + Q+  N+  +  + P  AS S +  LPDV  T ++ SS
Subjt:  EEEAVDEILSFASAFPSHEDQAVDLLLDDITTQLTSNDTDSNVSDLLDSDDEEMWME----VRQLPLNDLNLYESFPFRASISTIQALPDVFPT-DDFSS

Query:  -SWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT
         S  C +C  DE+   + VK+LPCKH +H  CII WL + N+CP+CR++LPT
Subjt:  -SWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACACAGCAAATAATAACGTTGAGAAACAACACAAAGAGGAAAATTGAGAGCAGAGGAATGAACAGATTATTGGAAGAAGAAGCAGTGGACGAGATTCTTTCATT
TGCCTCTGCCTTCCCTTCCCATGAGGATCAAGCCGTAGATCTTCTCCTCGATGACATCACAACCCAACTTACATCAAACGATACCGATTCTAATGTTTCGGACTTATTGG
ACAGTGACGATGAGGAGATGTGGATGGAAGTGAGACAACTTCCTCTTAATGATCTGAACCTTTATGAAAGCTTCCCGTTTCGGGCTTCAATATCGACGATTCAGGCACTA
CCAGATGTTTTTCCTACAGACGACTTTTCTTCTTCTTGGGCATGTGTTGTGTGTATGGATGACGAGATTGAGGCAAATGATGGGGTGAAACAGCTGCCCTGTAAACACAT
ATTTCATACACATTGTATTATTTCTTGGTTGGAATTGCACAATTCTTGCCCACTTTGTCGATACCAATTGCCCACATAA
mRNA sequenceShow/hide mRNA sequence
TTTAATTAGGGAATTATTCTGATTTATCTTAATAATCCAACAATTTCCCCATCTCATTCTCTTTATCCATTTAAAAAGGCAAAATAGTTGACGAATTATGTGAAGCACAA
ACAGGAATTTGAAAATAGTGCCATGGAAACACAGCAAATAATAACGTTGAGAAACAACACAAAGAGGAAAATTGAGAGCAGAGGAATGAACAGATTATTGGAAGAAGAAG
CAGTGGACGAGATTCTTTCATTTGCCTCTGCCTTCCCTTCCCATGAGGATCAAGCCGTAGATCTTCTCCTCGATGACATCACAACCCAACTTACATCAAACGATACCGAT
TCTAATGTTTCGGACTTATTGGACAGTGACGATGAGGAGATGTGGATGGAAGTGAGACAACTTCCTCTTAATGATCTGAACCTTTATGAAAGCTTCCCGTTTCGGGCTTC
AATATCGACGATTCAGGCACTACCAGATGTTTTTCCTACAGACGACTTTTCTTCTTCTTGGGCATGTGTTGTGTGTATGGATGACGAGATTGAGGCAAATGATGGGGTGA
AACAGCTGCCCTGTAAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGCACAATTCTTGCCCACTTTGTCGATACCAATTGCCCACATAA
Protein sequenceShow/hide protein sequence
METQQIITLRNNTKRKIESRGMNRLLEEEAVDEILSFASAFPSHEDQAVDLLLDDITTQLTSNDTDSNVSDLLDSDDEEMWMEVRQLPLNDLNLYESFPFRASISTIQAL
PDVFPTDDFSSSWACVVCMDDEIEANDGVKQLPCKHIFHTHCIISWLELHNSCPLCRYQLPT