CuGenDBv2

Gene ID	PI0003070
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr09:8130178..8131011
RNA-Seq Expression	PI0003070
Synteny	PI0003070
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]

1.9e-41

56.91

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Query:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAAD-------------------------------------------TSSKYSYCSLP-RY---SLLSGRLR
        IPQ F++HH CEKV+LTHLTF DDLMIFCAAD                                           T   ++  +LP RY    LL+GRLR
Subjt:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAAD-------------------------------------------TSSKYSYCSLP-RY---SLLSGRLR

Query:  STDCTPLIQRITSRIRSWLARVLSFARRLQLVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV
        S DC PLIQRITS+IRSW ARVLSFA RLQLVRS+LRS QV+WASVFVLPA VH+EVD++L SYLWRGKE GRGG KVAWV
Subjt:  STDCTPLIQRITSRIRSWLARVLSFARRLQLVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV

KAA0059752.1 F17F8.5 [Cucumis melo var. makuwa]

1.6e-40

56.91

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Query:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAAD-------------------------------------TSSKYSYC------SLP-RY---SLLSGRLR
        IPQ F++HH CEKV+LT+LTF DDLMIFCAAD                                      +S  + C      +LP RY    LL+GRLR
Subjt:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAAD-------------------------------------TSSKYSYC------SLP-RY---SLLSGRLR

Query:  STDCTPLIQRITSRIRSWLARVLSFARRLQLVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV
        S D  PLIQRITSRIRSW ARVLSFA RLQLVR +LRS QV+WASVFVLPA VHHEVD++L+SYLWRGKE GRGG KVAWV
Subjt:  STDCTPLIQRITSRIRSWLARVLSFARRLQLVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]

2.1e-43

66.89

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Query:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAAD-------------TSSKYSYCSLP-RY---SLLSGRLRSTDCTPLIQRITSRIRSWLARVLSFARRLQ
        IPQ FK+HH CEKV+LTHLTF DDLMIFCAAD              S  +   +LP RY    LL+GRLRS DC PLIQRITSRIRSW A VLSFA RLQ
Subjt:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAAD-------------TSSKYSYCSLP-RY---SLLSGRLRSTDCTPLIQRITSRIRSWLARVLSFARRLQ

Query:  LVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV
        LVRS+LRS QV+W SVF+LP  VH+EVD +L SYLWRGKE GRGG KVAWV
Subjt:  LVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV

TYK26641.1 putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa]

4.2e-44

66.23

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Query:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAADTSS-----------------KYSYCSLPRYSLLSGRLRSTDCTPLIQRITSRIRSWLARVLSFARRLQ
        IPQ F +HH CEKV+L HLTF DDLMIFCAAD SS                    Y  LP   LLSGRLRS+DC PLIQRITSRIRSW A+VLSFA RLQ
Subjt:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAADTSS-----------------KYSYCSLPRYSLLSGRLRSTDCTPLIQRITSRIRSWLARVLSFARRLQ

Query:  LVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV
        L+RS+LRS QVFWASVFVLP  VH++VD++L SYLWR KE GRGG KVAWV
Subjt:  LVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]

1.9e-41

56.91

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Query:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAAD-------------------------------------------TSSKYSYCSLP-RY---SLLSGRLR
        IPQ F++HH CEKV+LTHLTF DDLMIFCAAD                                           T   ++  +LP RY    LL+GRLR
Subjt:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAAD-------------------------------------------TSSKYSYCSLP-RY---SLLSGRLR

Query:  STDCTPLIQRITSRIRSWLARVLSFARRLQLVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV
        S DC PLIQRITS+IRSW ARVLSFA RLQLVRS+LRS QV+WASVFVLPA VH+EVD++L SYLWRGKE GRGG KVAWV
Subjt:  STDCTPLIQRITSRIRSWLARVLSFARRLQLVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPE5 Reverse transcriptase domain-containing protein

9.4e-42

56.91

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Query:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAAD-------------------------------------------TSSKYSYCSLP-RY---SLLSGRLR
        IPQ F++HH CEKV+LTHLTF DDLMIFCAAD                                           T   ++  +LP RY    LL+GRLR
Subjt:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAAD-------------------------------------------TSSKYSYCSLP-RY---SLLSGRLR

Query:  STDCTPLIQRITSRIRSWLARVLSFARRLQLVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV
        S DC PLIQRITS+IRSW ARVLSFA RLQLVRS+LRS QV+WASVFVLPA VH+EVD++L SYLWRGKE GRGG KVAWV
Subjt:  STDCTPLIQRITSRIRSWLARVLSFARRLQLVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV

A0A5A7UV01 F17F8.5

8.0e-41

56.91

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Query:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAAD-------------------------------------TSSKYSYC------SLP-RY---SLLSGRLR
        IPQ F++HH CEKV+LT+LTF DDLMIFCAAD                                      +S  + C      +LP RY    LL+GRLR
Subjt:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAAD-------------------------------------TSSKYSYC------SLP-RY---SLLSGRLR

Query:  STDCTPLIQRITSRIRSWLARVLSFARRLQLVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV
        S D  PLIQRITSRIRSW ARVLSFA RLQLVR +LRS QV+WASVFVLPA VHHEVD++L+SYLWRGKE GRGG KVAWV
Subjt:  STDCTPLIQRITSRIRSWLARVLSFARRLQLVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein

1.0e-43

66.89

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Query:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAAD-------------TSSKYSYCSLP-RY---SLLSGRLRSTDCTPLIQRITSRIRSWLARVLSFARRLQ
        IPQ FK+HH CEKV+LTHLTF DDLMIFCAAD              S  +   +LP RY    LL+GRLRS DC PLIQRITSRIRSW A VLSFA RLQ
Subjt:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAAD-------------TSSKYSYCSLP-RY---SLLSGRLRSTDCTPLIQRITSRIRSWLARVLSFARRLQ

Query:  LVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV
        LVRS+LRS QV+W SVF+LP  VH+EVD +L SYLWRGKE GRGG KVAWV
Subjt:  LVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV

A0A5D3DSA8 Putative non-LTR retroelement reverse transcriptase

2.0e-44

66.23

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Query:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAADTSS-----------------KYSYCSLPRYSLLSGRLRSTDCTPLIQRITSRIRSWLARVLSFARRLQ
        IPQ F +HH CEKV+L HLTF DDLMIFCAAD SS                    Y  LP   LLSGRLRS+DC PLIQRITSRIRSW A+VLSFA RLQ
Subjt:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAADTSS-----------------KYSYCSLPRYSLLSGRLRSTDCTPLIQRITSRIRSWLARVLSFARRLQ

Query:  LVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV
        L+RS+LRS QVFWASVFVLP  VH++VD++L SYLWR KE GRGG KVAWV
Subjt:  LVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV

A0A5D3DXE4 Reverse transcriptase domain-containing protein

9.4e-42

56.91

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Query:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAAD-------------------------------------------TSSKYSYCSLP-RY---SLLSGRLR
        IPQ F++HH CEKV+LTHLTF DDLMIFCAAD                                           T   ++  +LP RY    LL+GRLR
Subjt:  IPQCFKYHHWCEKVRLTHLTFVDDLMIFCAAD-------------------------------------------TSSKYSYCSLP-RY---SLLSGRLR

Query:  STDCTPLIQRITSRIRSWLARVLSFARRLQLVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV
        S DC PLIQRITS+IRSW ARVLSFA RLQLVRS+LRS QV+WASVFVLPA VH+EVD++L SYLWRGKE GRGG KVAWV
Subjt:  STDCTPLIQRITSRIRSWLARVLSFARRLQLVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGKEGGRGGAKVAWV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.7e-14

41.44

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Query:  DDLMIFCAADTSSKYSYCSLPRYSLLSGRLRSTDCTPLIQRITSRIRSWLARVLSFARRLQLVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGK
        D L  F  A  +    Y  LP   LL+ ++ ++D  PL+++I  RI  W AR LSFA RLQL+ S++ S   FW S F LP+    E+D +  S+LW G 
Subjt:  DDLMIFCAADTSSKYSYCSLPRYSLLSGRLRSTDCTPLIQRITSRIRSWLARVLSFARRLQLVRSMLRSFQVFWASVFVLPAVVHHEVDRLLMSYLWRGK

Query:  EGGRGGAKVAW
        E     AKVAW
Subjt:  EGGRGGAKVAW

Sequences

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CDS sequence

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ATGATTCCTCAGTGTTTTAAGTACCACCATTGGTGTGAGAAGGTTCGTTTGACCCATCTGACCTTCGTTGATGATCTTATGATTTTTTGTGCTGCTGACACCTCCTCTAA
ATACTCTTACTGTTCCTTACCTAGGTATTCACTACTCTCTGGTAGGTTGCGGTCTACTGATTGTACGCCTCTCATTCAACGTATTACTAGTCGAATTCGGTCTTGGTTGG
CTAGAGTTTTGTCCTTTGCTAGGAGACTTCAGCTGGTGCGTTCAATGTTGCGGAGTTTTCAGGTCTTTTGGGCTAGTGTGTTTGTTTTACCAGCTGTGGTACATCATGAG
GTTGATAGGCTTTTGATGTCGTATCTCTGGAGGGGTAAGGAGGGTGGTAGAGGGGGTGCGAAGGTGGCTTGGGTAGGGGGCGGTCGTTGTGGTCTATGGACAGTAGGGTT
GGTTGGTCCTGGTGTCTTCATGCTATCCTGCGGCAGCATAATAGTCATAGAGAGCATGTCCATTTGGAGGTTGGGGATGGTAGGCGGTGTCATATGTGGCTTGATCCTTG
GTTGCAGGGTGGCTCGATCATTGGGCAGTTGGGTGAGAGGGTGGTGTACGATGCGACGAGTAGTAGGGAAGCTAGGCTTTCAGAGTTCATTGGTTCAGATGGTGAGTGGA
GGTGGTCGAAGTTTCTTGGGAGTTACTTAA

mRNA sequence

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Protein sequence

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MIPQCFKYHHWCEKVRLTHLTFVDDLMIFCAADTSSKYSYCSLPRYSLLSGRLRSTDCTPLIQRITSRIRSWLARVLSFARRLQLVRSMLRSFQVFWASVFVLPAVVHHE
VDRLLMSYLWRGKEGGRGGAKVAWVGGGRCGLWTVGLVGPGVFMLSCGSIIVIESMSIWRLGMVGGVICGLILGCRVARSLGSWVRGWCTMRRVVGKLGFQSSLVQMVSG
GGRSFLGVT

PI0003070 (gene) of Melon (PI 482460) v1 genome