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PI0003080 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003080
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr05:13856592..13857935
RNA-Seq ExpressionPI0003080
SyntenyPI0003080
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032583.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-4433.33Show/hide
Query:  MSTAKQMGKTHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTT---RINYE----------------
        MS++   GK   DRL+E+EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR +G PI+EL+TRVD LE        +NYE                
Subjt:  MSTAKQMGKTHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTT---RINYE----------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------------------------------------------------------------QRLFDLSS
                                                                                                    +RLFDLS+
Subjt:  --------------------------------------------------------------------------------------------QRLFDLSS

Query:  ESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGRGQNPQNSQNRPLACFICKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTE
        +SQDTRR  SSSSGG++NNR  SPK  GGDRR +GDRR  QSN+GN+ RG + QN  NRPL+CFICKGPH+ARECPN+TAFNAFQA+LTSDSD++  QTE
Subjt:  ESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGRGQNPQNSQNRPLACFICKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTE

Query:  GEDAQIEEGDNPRIGALKFLSAL
        GE  Q EE DNPR+GALKFLS+L
Subjt:  GEDAQIEEGDNPRIGALKFLSAL

KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]4.3e-4361.49Show/hide
Query:  IEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTTRINYEQRLFDLSSESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGR
        I ++SEK      V G       K    RV  L   T+     +RLFDLS++SQDTRR  SSSSGG++NNR  SPK  GGDRR SGDRR +QSN+GN+ R
Subjt:  IEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTTRINYEQRLFDLSSESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGR

Query:  GQNPQNSQNRPLACFICKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTEGEDAQIEEGDNPRIGALKFLSAL
        G N QN  NRPL+CFICKGPH+ARECPN+TAFNAFQA+LTSDSD++  QTEGE  Q EE DNPR+GALKFLS+L
Subjt:  GQNPQNSQNRPLACFICKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTEGEDAQIEEGDNPRIGALKFLSAL

KAA0060348.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-4436.12Show/hide
Query:  MSTAKQMGKTHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTT---RINYE----------------
        MS+    GK   DRLVE+EEQMLYL+E+ D++R+LE  ++E+SEK + IDAV GR +G PI+EL+TRVD LE        +NYE                
Subjt:  MSTAKQMGKTHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTT---RINYE----------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------QRLFDLSSESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGRGQN
                                                +RLFDLS++ QDTRR  SSSSGG++NNR  SPK  GGDRR +GDRR  QSN+GN+ RG +
Subjt:  ----------------------------------------QRLFDLSSESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGRGQN

Query:  PQNSQNRPLACFICKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTEGEDAQIEEGDNPRIGALKFLSAL
         QN  NRPL+CFICKGPH+AREC N+TAFNAFQA+L SDSD++  QTE E  Q EE DNPR+GALK LS+L
Subjt:  PQNSQNRPLACFICKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTEGEDAQIEEGDNPRIGALKFLSAL

KAA0063458.1 uncharacterized protein E6C27_scaffold977G00440 [Cucumis melo var. makuwa]9.8e-4837.99Show/hide
Query:  MSTAKQMGKTHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTT---RINYE----------------
        MS++   GK   DRLVE+EEQMLYL+E+P+++R+LE R++E+SEK + IDAV GR +G  I+EL+TRVD LE        +NYE                
Subjt:  MSTAKQMGKTHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTT---RINYE----------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------QRLFDLSSESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGRGQNPQNSQNRPLACFI
                                   +RLFDLS++SQDTRR  SSSSGG++NNR  SPK  GGDRR +GDRR  QSN+GN+ RG + QN  NRPL+CFI
Subjt:  ---------------------------QRLFDLSSESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGRGQNPQNSQNRPLACFI

Query:  CKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTEGEDAQIEEGDNPRIGALKFLSAL
        CKGPH+ARECPN+T FNAFQA+L SDSD+   QTE E  Q EE DNPR+GALKFLS+L
Subjt:  CKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTEGEDAQIEEGDNPRIGALKFLSAL

TYK22097.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-4436.12Show/hide
Query:  MSTAKQMGKTHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTT---RINYE----------------
        MS+    GK   DRLVE+EEQMLYL+E+ D++R+LE  ++E+SEK + IDAV GR +G PI+EL+TRVD LE        +NYE                
Subjt:  MSTAKQMGKTHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTT---RINYE----------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------QRLFDLSSESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGRGQN
                                                +RLFDLS++ QDTRR  SSSSGG++NNR  SPK  GGDRR +GDRR  QSN+GN+ RG +
Subjt:  ----------------------------------------QRLFDLSSESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGRGQN

Query:  PQNSQNRPLACFICKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTEGEDAQIEEGDNPRIGALKFLSAL
         QN  NRPL+CFICKGPH+AREC N+TAFNAFQA+L SDSD++  QTE E  Q EE DNPR+GALK LS+L
Subjt:  PQNSQNRPLACFICKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTEGEDAQIEEGDNPRIGALKFLSAL

TrEMBL top hitse value%identityAlignment
A0A5A7SQC7 Reverse transcriptase6.4e-4533.33Show/hide
Query:  MSTAKQMGKTHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTT---RINYE----------------
        MS++   GK   DRL+E+EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR +G PI+EL+TRVD LE        +NYE                
Subjt:  MSTAKQMGKTHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTT---RINYE----------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------------------------------------------------------------QRLFDLSS
                                                                                                    +RLFDLS+
Subjt:  --------------------------------------------------------------------------------------------QRLFDLSS

Query:  ESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGRGQNPQNSQNRPLACFICKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTE
        +SQDTRR  SSSSGG++NNR  SPK  GGDRR +GDRR  QSN+GN+ RG + QN  NRPL+CFICKGPH+ARECPN+TAFNAFQA+LTSDSD++  QTE
Subjt:  ESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGRGQNPQNSQNRPLACFICKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTE

Query:  GEDAQIEEGDNPRIGALKFLSAL
        GE  Q EE DNPR+GALKFLS+L
Subjt:  GEDAQIEEGDNPRIGALKFLSAL

A0A5A7SUK4 Reverse transcriptase2.1e-4361.49Show/hide
Query:  IEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTTRINYEQRLFDLSSESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGR
        I ++SEK      V G       K    RV  L   T+     +RLFDLS++SQDTRR  SSSSGG++NNR  SPK  GGDRR SGDRR +QSN+GN+ R
Subjt:  IEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTTRINYEQRLFDLSSESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGR

Query:  GQNPQNSQNRPLACFICKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTEGEDAQIEEGDNPRIGALKFLSAL
        G N QN  NRPL+CFICKGPH+ARECPN+TAFNAFQA+LTSDSD++  QTEGE  Q EE DNPR+GALKFLS+L
Subjt:  GQNPQNSQNRPLACFICKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTEGEDAQIEEGDNPRIGALKFLSAL

A0A5A7UYM0 Reverse transcriptase1.1e-4436.12Show/hide
Query:  MSTAKQMGKTHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTT---RINYE----------------
        MS+    GK   DRLVE+EEQMLYL+E+ D++R+LE  ++E+SEK + IDAV GR +G PI+EL+TRVD LE        +NYE                
Subjt:  MSTAKQMGKTHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTT---RINYE----------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------QRLFDLSSESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGRGQN
                                                +RLFDLS++ QDTRR  SSSSGG++NNR  SPK  GGDRR +GDRR  QSN+GN+ RG +
Subjt:  ----------------------------------------QRLFDLSSESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGRGQN

Query:  PQNSQNRPLACFICKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTEGEDAQIEEGDNPRIGALKFLSAL
         QN  NRPL+CFICKGPH+AREC N+TAFNAFQA+L SDSD++  QTE E  Q EE DNPR+GALK LS+L
Subjt:  PQNSQNRPLACFICKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTEGEDAQIEEGDNPRIGALKFLSAL

A0A5D3B9T5 Reverse transcriptase domain-containing protein4.8e-4837.99Show/hide
Query:  MSTAKQMGKTHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTT---RINYE----------------
        MS++   GK   DRLVE+EEQMLYL+E+P+++R+LE R++E+SEK + IDAV GR +G  I+EL+TRVD LE        +NYE                
Subjt:  MSTAKQMGKTHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTT---RINYE----------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------QRLFDLSSESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGRGQNPQNSQNRPLACFI
                                   +RLFDLS++SQDTRR  SSSSGG++NNR  SPK  GGDRR +GDRR  QSN+GN+ RG + QN  NRPL+CFI
Subjt:  ---------------------------QRLFDLSSESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGRGQNPQNSQNRPLACFI

Query:  CKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTEGEDAQIEEGDNPRIGALKFLSAL
        CKGPH+ARECPN+T FNAFQA+L SDSD+   QTE E  Q EE DNPR+GALKFLS+L
Subjt:  CKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTEGEDAQIEEGDNPRIGALKFLSAL

A0A5D3DEJ3 Reverse transcriptase1.1e-4436.12Show/hide
Query:  MSTAKQMGKTHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTT---RINYE----------------
        MS+    GK   DRLVE+EEQMLYL+E+ D++R+LE  ++E+SEK + IDAV GR +G PI+EL+TRVD LE        +NYE                
Subjt:  MSTAKQMGKTHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTT---RINYE----------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------QRLFDLSSESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGRGQN
                                                +RLFDLS++ QDTRR  SSSSGG++NNR  SPK  GGDRR +GDRR  QSN+GN+ RG +
Subjt:  ----------------------------------------QRLFDLSSESQDTRRPSSSSSGGNKNNRAGSPKAGGGDRRSSGDRRPFQSNSGNTGRGQN

Query:  PQNSQNRPLACFICKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTEGEDAQIEEGDNPRIGALKFLSAL
         QN  NRPL+CFICKGPH+AREC N+TAFNAFQA+L SDSD++  QTE E  Q EE DNPR+GALK LS+L
Subjt:  PQNSQNRPLACFICKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTEGEDAQIEEGDNPRIGALKFLSAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACAGCGAAACAGATGGGCAAGACCCACGCAGACCGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGATGGAAATTCCGGACACTGTCCGCTTCTTGGAAGG
ACGGATCGAGGAAGTGTCCGAGAAAGCTGATGCTATTGACGCGGTGACCGGTCGCTTCGACGGTTTACCCATAAAGGAGTTGTTAACAAGAGTTGACACCTTAGAGGCAA
AGACTACCAGAATAAACTACGAACAACGACTGTTTGACCTGTCCAGTGAGTCTCAAGATACGAGACGTCCTTCAAGTTCCTCATCTGGAGGAAACAAGAACAATCGTGCT
GGTTCTCCAAAGGCCGGAGGCGGAGATAGGCGATCTAGTGGTGATCGCAGGCCCTTCCAATCGAATTCTGGGAACACGGGGCGAGGACAGAATCCCCAAAACTCTCAGAA
TCGTCCCCTTGCCTGTTTCATATGTAAGGGGCCACACCTGGCAAGAGAGTGCCCGAACCGAACCGCCTTCAACGCCTTTCAGGCTGCCTTAACCTCAGACTCAGATGACA
AGAATGGTCAAACAGAGGGAGAGGATGCCCAGATAGAAGAAGGCGATAACCCCAGGATAGGAGCCCTGAAGTTTCTATCAGCTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTACAGCGAAACAGATGGGCAAGACCCACGCAGACCGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGATGGAAATTCCGGACACTGTCCGCTTCTTGGAAGG
ACGGATCGAGGAAGTGTCCGAGAAAGCTGATGCTATTGACGCGGTGACCGGTCGCTTCGACGGTTTACCCATAAAGGAGTTGTTAACAAGAGTTGACACCTTAGAGGCAA
AGACTACCAGAATAAACTACGAACAACGACTGTTTGACCTGTCCAGTGAGTCTCAAGATACGAGACGTCCTTCAAGTTCCTCATCTGGAGGAAACAAGAACAATCGTGCT
GGTTCTCCAAAGGCCGGAGGCGGAGATAGGCGATCTAGTGGTGATCGCAGGCCCTTCCAATCGAATTCTGGGAACACGGGGCGAGGACAGAATCCCCAAAACTCTCAGAA
TCGTCCCCTTGCCTGTTTCATATGTAAGGGGCCACACCTGGCAAGAGAGTGCCCGAACCGAACCGCCTTCAACGCCTTTCAGGCTGCCTTAACCTCAGACTCAGATGACA
AGAATGGTCAAACAGAGGGAGAGGATGCCCAGATAGAAGAAGGCGATAACCCCAGGATAGGAGCCCTGAAGTTTCTATCAGCTCTTTAG
Protein sequenceShow/hide protein sequence
MSTAKQMGKTHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRFDGLPIKELLTRVDTLEAKTTRINYEQRLFDLSSESQDTRRPSSSSSGGNKNNRA
GSPKAGGGDRRSSGDRRPFQSNSGNTGRGQNPQNSQNRPLACFICKGPHLARECPNRTAFNAFQAALTSDSDDKNGQTEGEDAQIEEGDNPRIGALKFLSAL