CuGenDBv2

Gene ID	PI0003087
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Sm-like protein LSM2
Genome location	chr01:20910452..20912377
RNA-Seq Expression	PI0003087
Synteny	PI0003087
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0000932 - P-body (cellular component) GO:0005688 - U6 snRNP (cellular component) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:0120115 - Lsm2-8 complex (cellular component) GO:1990726 - Lsm1-7-Pat1 complex (cellular component) GO:0003723 - RNA binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR001163 - LSM domain, eukaryotic/archaea-type IPR010920 - LSM domain superfamily IPR016654 - U6 snRNA-associated Sm-like protein LSm2

Homology

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GenBank top hits

e value

%identity

Alignment

KAA8543201.1 hypothetical protein F0562_021304 [Nyssa sinensis]

3.0e-27

100

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Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR

XP_010038129.1 sm-like protein LSM2 [Eucalyptus grandis]

3.0e-27

100

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Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR

XP_012092296.1 sm-like protein LSM2 [Jatropha curcas]

3.0e-27

100

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Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR

XP_014495462.1 sm-like protein LSM2 [Vigna radiata var. radiata]

3.0e-27

100

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Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR

XP_039061884.1 sm-like protein LSM2 [Hibiscus syriacus]

3.0e-27

100

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Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR

TrEMBL top hits

e value

%identity

Alignment

A0A0B0N830 Sm-like protein LSM2

1.4e-27

100

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Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR

A0A0B0PKE4 Sm-like protein LSM2

1.4e-27

100

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Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR

A0A4Y7L7W5 Sm-like protein LSM2

1.4e-27

100

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Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR

A0A5D2BJZ3 Sm-like protein LSM2

1.4e-27

100

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Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR

A0A5J5UQ23 Sm-like protein LSM2

1.4e-27

100

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Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR

SwissProt top hits

e value

%identity

Alignment

O35900 U6 snRNA-associated Sm-like protein LSm2

1.9e-21

74.6

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Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
        MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCFIR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR

O94408 U6 snRNA-associated Sm-like protein LSm2

3.4e-18

66.67

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Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
        MLF+S+FK L+  EVTVELKND++IRG L SVDQ+LN+KLEN  VVD  KYPHM +V++ FIR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR

Q1H595 Sm-like protein LSM2

1.1e-29

98.41

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Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
        MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR

Q54TF6 Probable U6 snRNA-associated Sm-like protein LSm2

4.8e-20

68.25

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Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
        MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NCFIR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR

Q9Y333 U6 snRNA-associated Sm-like protein LSm2

1.9e-21

74.6

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Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
        MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCFIR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR

Arabidopsis top hits

e value

%identity

Alignment

AT1G03330.1 Small nuclear ribonucleoprotein family protein

8.1e-31

98.41

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Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
        MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR

Sequences

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CDS sequence

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ATGTTATTTTTCTCATACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTTGAGTTGAAGAACGACCTAGCAATTCGAGGAACTCTGCATTCTGTAGATCAGTATCTGAA
CATCAAACTGGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCACATGCTTTCTGTGAGAAACTGTTTTATCAGGGATCGGTGGTGA

mRNA sequence

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AATTCATTAAAATTTAAAAGAGTAAACTGGACTTATTTTTCAAAAGATCCCTGTTTTTAATATAGATATAGATATGAATGTAGAATCGATATTAGTAGAGATATAGATTG
CCATGAAAGAAGTAGGTTGTTATATATTATTTTTTCTTTTATAATCTAAATCCTTAAAGGTGTGTTTTCTCAATTGATAGCTCAGACGACTTTTTAACATTTACACATGT
CGATCTTCGAGCGTAGATAGAGTGAAGGTTGGCATCTCAAACCTCTAGTGAAAATGTTATTTTTCTCATACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTTGAGTTG
AAGAACGACCTAGCAATTCGAGGAACTCTGCATTCTGTAGATCAGTATCTGAACATCAAACTGGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCACATGCTTTC
TGTGAGAAACTGTTTTATCAGGGATCGGTGGTGAGATACGTTCAACTTCCACCAGATGGTGTTGATATCGAGCTGTTGCATGACGCCACTAGACGTGAGGCTCGGGGTGG
CTAATGTCACTTTGTTTGTAAGTTTGTATTGAATCACATGGAAATTATTAGAGTGCACTTTTTAGCATACTGCAATATGAGACAATTAGAAGCTTGTACATTCTGTTCAA
GTATTCTTGATCAAAGAATCCAATGAGATTCTTCTGTTCAGCGGGTAATAGTGAAACCAAGGGTTGGGGCCTTCACCATGACAAAAATGTTGTTATGCTTTTGAATTCAC
TTCCGAATAATTTCA

Protein sequence

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MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRDRW

PI0003087 (gene) of Melon (PI 482460) v1 genome