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PI0003092 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003092
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr10:4041597..4042391
RNA-Seq ExpressionPI0003092
SyntenyPI0003092
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036574.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.2e-9169.5Show/hide
Query:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ
        GDITKP K                       I+ + + EDI+YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFD+AKELWDFL TRFQSIGLAHYYQ
Subjt:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ

Query:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS
        LHS L                        LD+ KISPDHIRLIKVLMGL  EYE VRAALLHRNPLPSLDAAVQEILFEEKRLGI SSL SD ALATT+ 
Subjt:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS

Query:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK
        R  NE+ FCKN KL GHKFANCPTIECRYCHKRGHIL+NCPTRP  PPGHSH PKFS K
Subjt:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK

KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.6e-9169.88Show/hide
Query:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ
        GDITKP K                       I+ + + EDI+YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFD+AKELWDFL TRFQSIGLAHYYQ
Subjt:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ

Query:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS
        LHS L                        LD+ KISPDHIRLIKVLMGL  EYESVRAALLHRNPLPSLDAAVQEILFEEKRLGI SSL SD ALATT+ 
Subjt:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS

Query:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK
        R  NE+ FCKN KL GHKFANCPTIECRYCHKRGHIL+NCPTRP  PPGHSH PKFS K
Subjt:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK

KAA0047794.1 putative mitochondrial protein [Cucumis melo var. makuwa]9.3e-9570.66Show/hide
Query:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ
        GDITKP K T     TS + T++ D +  + I+ + T EDI+YIERLEDWDSKNHQIITWLGNTSIPAIHTQFD FD+AKELW+FL TRFQSIGLAHYYQ
Subjt:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ

Query:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS
        LHS L                        LD+ KISPDHIRLIKVLMGL  EYESVRAALLHRNPLPSLDAAVQEILFEEKRLGI SSLPSD ALATT+ 
Subjt:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS

Query:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK
        R  NE++FCKN KL GHKFANCPTIECRYC+KRGHIL+NCPTRP  PP HSH  KFS K
Subjt:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]4.8e-9169.5Show/hide
Query:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ
        GDITKP K                       I+ + + EDI+YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFD+AKELWDFL TRFQSIGLAHYYQ
Subjt:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ

Query:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS
        LHS L                        L++ KISPDHIRLIKVLMGL  EYESVRAALLHRNPLPSLDAAVQEILFEEKRLGI SSL SD ALATT+ 
Subjt:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS

Query:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK
        R  NE+ FCKN KL GHKFANCPTIECRYCHKRGHIL+NCPTRP  PPGHSH PKFS K
Subjt:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]2.1e-9471.43Show/hide
Query:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ
        GDITKP K      T   DTT+N D D  +  +Q+ T E  KYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ
Subjt:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ

Query:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS
        LHS L                        LD+ KI+P+HIRLIKVLMGL  EYESVRAALLHRNPLPSLDAA+QEILFEE RLGI SSLPSD ALATT+S
Subjt:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS

Query:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK
        R  NES FCKN KL GHKFANCPTIECRYCHKRGHIL+NCPTRP  PPG  + PK S+K
Subjt:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882002.3e-9169.5Show/hide
Query:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ
        GDITKP K                       I+ + + EDI+YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFD+AKELWDFL TRFQSIGLAHYYQ
Subjt:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ

Query:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS
        LHS L                        L++ KISPDHIRLIKVLMGL  EYESVRAALLHRNPLPSLDAAVQEILFEEKRLGI SSL SD ALATT+ 
Subjt:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS

Query:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK
        R  NE+ FCKN KL GHKFANCPTIECRYCHKRGHIL+NCPTRP  PPGHSH PKFS K
Subjt:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-9169.5Show/hide
Query:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ
        GDITKP K                       I+ + + EDI+YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFD+AKELWDFL TRFQSIGLAHYYQ
Subjt:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ

Query:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS
        LHS L                        LD+ KISPDHIRLIKVLMGL  EYE VRAALLHRNPLPSLDAAVQEILFEEKRLGI SSL SD ALATT+ 
Subjt:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS

Query:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK
        R  NE+ FCKN KL GHKFANCPTIECRYCHKRGHIL+NCPTRP  PPGHSH PKFS K
Subjt:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK

A0A5A7TXR0 Putative mitochondrial protein4.5e-9570.66Show/hide
Query:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ
        GDITKP K T     TS + T++ D +  + I+ + T EDI+YIERLEDWDSKNHQIITWLGNTSIPAIHTQFD FD+AKELW+FL TRFQSIGLAHYYQ
Subjt:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ

Query:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS
        LHS L                        LD+ KISPDHIRLIKVLMGL  EYESVRAALLHRNPLPSLDAAVQEILFEEKRLGI SSLPSD ALATT+ 
Subjt:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS

Query:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK
        R  NE++FCKN KL GHKFANCPTIECRYC+KRGHIL+NCPTRP  PP HSH  KFS K
Subjt:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK

A0A5D3BW47 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-8974.56Show/hide
Query:  IIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSHL------------------------LD
        I+ + + EDI+YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFD+AKELWDFL TRFQSIGLAHYYQLHS L                        LD
Subjt:  IIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSHL------------------------LD

Query:  KVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNSRPTNESTFCKNYKLQGHKFANCPTIECRYCH
        + KISPDHIRLIKVL+GL  +YESVRAALLHRNPLPSLDAAV+EILFEEKRLGI SSL SD ALATT+ R  NE+ FCKN KL GHKFANCPTIE RYCH
Subjt:  KVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNSRPTNESTFCKNYKLQGHKFANCPTIECRYCH

Query:  KRGHILENCPTRPRCPPGHSHTPKFSSK
        KRGHIL+NCPTRP  PPGHSH PKFS K
Subjt:  KRGHILENCPTRPRCPPGHSHTPKFSSK

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-947.9e-9269.88Show/hide
Query:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ
        GDITKP K                       I+ + + EDI+YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFD+AKELWDFL TRFQSIGLAHYYQ
Subjt:  GDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQ

Query:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS
        LHS L                        LD+ KISPDHIRLIKVLMGL  EYESVRAALLHRNPLPSLDAAVQEILFEEKRLGI SSL SD ALATT+ 
Subjt:  LHSHL------------------------LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNS

Query:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK
        R  NE+ FCKN KL GHKFANCPTIECRYCHKRGHIL+NCPTRP  PPGHSH PKFS K
Subjt:  RPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILENCPTRPRCPPGHSHTPKFSSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTATAGTGATGGCGATATCACCAAGCCTGATAAACTCACTCATTCAGGGAATACCACCAGTTCGGACACCACTAAGAATGCGGATGTAGACCTCCCAAATACTAT
CATTCAGAAGATTACTACCGAAGACATCAAGTATATTGAAAGACTTGAGGACTGGGATAGCAAAAATCATCAAATCATCACATGGTTGGGTAACACTTCTATTCCGGCTA
TTCATACACAATTTGATGCTTTTGACACTGCAAAAGAACTTTGGGATTTTCTGTCCACACGCTTTCAATCTATTGGTCTTGCACATTATTACCAATTACATTCTCACCTT
TTAGACAAGGTAAAAATCAGTCCTGACCATATTCGTCTCATCAAAGTTCTTATGGGACTCTGCCTAGAGTATGAATCTGTTCGGGCTGCTCTTTTACATCGCAATCCTCT
ACCATCACTTGACGCCGCCGTTCAGGAAATCTTATTTGAGGAGAAAAGACTTGGAATTTTCTCATCTCTGCCCTCAGATGCTGCCCTTGCAACCACTAACTCACGGCCTA
CTAATGAGTCCACTTTCTGCAAAAATTATAAACTTCAGGGCCATAAGTTTGCTAATTGTCCTACCATTGAGTGCAGGTATTGTCACAAGCGAGGTCACATCTTGGAAAAT
TGTCCAACTCGTCCACGTTGCCCTCCTGGTCACTCACACACACCCAAGTTCTCGTCGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTATAGTGATGGCGATATCACCAAGCCTGATAAACTCACTCATTCAGGGAATACCACCAGTTCGGACACCACTAAGAATGCGGATGTAGACCTCCCAAATACTAT
CATTCAGAAGATTACTACCGAAGACATCAAGTATATTGAAAGACTTGAGGACTGGGATAGCAAAAATCATCAAATCATCACATGGTTGGGTAACACTTCTATTCCGGCTA
TTCATACACAATTTGATGCTTTTGACACTGCAAAAGAACTTTGGGATTTTCTGTCCACACGCTTTCAATCTATTGGTCTTGCACATTATTACCAATTACATTCTCACCTT
TTAGACAAGGTAAAAATCAGTCCTGACCATATTCGTCTCATCAAAGTTCTTATGGGACTCTGCCTAGAGTATGAATCTGTTCGGGCTGCTCTTTTACATCGCAATCCTCT
ACCATCACTTGACGCCGCCGTTCAGGAAATCTTATTTGAGGAGAAAAGACTTGGAATTTTCTCATCTCTGCCCTCAGATGCTGCCCTTGCAACCACTAACTCACGGCCTA
CTAATGAGTCCACTTTCTGCAAAAATTATAAACTTCAGGGCCATAAGTTTGCTAATTGTCCTACCATTGAGTGCAGGTATTGTCACAAGCGAGGTCACATCTTGGAAAAT
TGTCCAACTCGTCCACGTTGCCCTCCTGGTCACTCACACACACCCAAGTTCTCGTCGAAATAG
Protein sequenceShow/hide protein sequence
MAYSDGDITKPDKLTHSGNTTSSDTTKNADVDLPNTIIQKITTEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSHL
LDKVKISPDHIRLIKVLMGLCLEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIFSSLPSDAALATTNSRPTNESTFCKNYKLQGHKFANCPTIECRYCHKRGHILEN
CPTRPRCPPGHSHTPKFSSK