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PI0003098 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003098
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:11944384..11945926
RNA-Seq ExpressionPI0003098
SyntenyPI0003098
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]2.7e-4974.6Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA
        GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLPA
Subjt:  GHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA

Query:  QPDHANVSAISLRSGKTLQTPPSEEK
        QPD+ANVSAISLRSGK L TP ++EK
Subjt:  QPDHANVSAISLRSGKTLQTPPSEEK

KAA0038454.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-4874.6Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA
        GH NDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT SFQ EMKQQM+QLT AISK++GKGKLPA
Subjt:  GHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA

Query:  QPDHANVSAISLRSGKTLQTPPSEEK
        QPDHANVSAISLRSGK L TP ++EK
Subjt:  QPDHANVSAISLRSGKTLQTPPSEEK

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.1e-4871.76Show/hide
Query:  GSDGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGK
        G  GHPNDKC  ++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GKGK
Subjt:  GSDGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGK

Query:  LPAQPDHANVSAISLRSGKTLQTPPSEEKMK
        LPAQPD+ANVSAISLRSGK L TP ++EK K
Subjt:  LPAQPDHANVSAISLRSGKTLQTPPSEEKMK

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-4872.87Show/hide
Query:  GSDGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGK
        G  GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT AISK++GKGK
Subjt:  GSDGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGK

Query:  LPAQPDHANVSAISLRSGKTLQTPPSEEK
        LPAQPDHANVSAISLRSGK L TP ++EK
Subjt:  LPAQPDHANVSAISLRSGKTLQTPPSEEK

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-4870.8Show/hide
Query:  GSDGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGK
        G  GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GKGK
Subjt:  GSDGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGK

Query:  LPAQPDHANVSAISLRSGKTLQTPPSEEKMKIRKRKK
        LPAQPDHANVSAISLRSGK L TP ++EK K+  +K+
Subjt:  LPAQPDHANVSAISLRSGKTLQTPPSEEKMKIRKRKK

TrEMBL top hitse value%identityAlignment
A0A5A7T4R3 Retrotransposon gag protein8.5e-4974.6Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA
        GH NDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT SFQ EMKQQM+QLT AISK++GKGKLPA
Subjt:  GHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA

Query:  QPDHANVSAISLRSGKTLQTPPSEEK
        QPDHANVSAISLRSGK L TP ++EK
Subjt:  QPDHANVSAISLRSGKTLQTPPSEEK

A0A5A7V0Q7 Retrotransposon gag protein2.5e-4871.76Show/hide
Query:  GSDGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGK
        G  GHPNDKC  ++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GKGK
Subjt:  GSDGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGK

Query:  LPAQPDHANVSAISLRSGKTLQTPPSEEKMK
        LPAQPD+ANVSAISLRSGK L TP ++EK K
Subjt:  LPAQPDHANVSAISLRSGKTLQTPPSEEKMK

A0A5D3CB46 Retrotransposon gag protein1.4e-4872.87Show/hide
Query:  GSDGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGK
        G  GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT AISK++GKGK
Subjt:  GSDGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGK

Query:  LPAQPDHANVSAISLRSGKTLQTPPSEEK
        LPAQPDHANVSAISLRSGK L TP ++EK
Subjt:  LPAQPDHANVSAISLRSGKTLQTPPSEEK

A0A5D3CFE7 Retrotransposon gag protein6.5e-4970.8Show/hide
Query:  GSDGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGK
        G  GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GKGK
Subjt:  GSDGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGK

Query:  LPAQPDHANVSAISLRSGKTLQTPPSEEKMKIRKRKK
        LPAQPDHANVSAISLRSGK L TP ++EK K+  +K+
Subjt:  LPAQPDHANVSAISLRSGKTLQTPPSEEKMKIRKRKK

E5GBZ4 Retrotransposon gag protein1.3e-4974.6Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA
        GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLPA
Subjt:  GHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA

Query:  QPDHANVSAISLRSGKTLQTPPSEEK
        QPD+ANVSAISLRSGK L TP ++EK
Subjt:  QPDHANVSAISLRSGKTLQTPPSEEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCGACGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGC
CGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACACCCAACGACCCGCACAAGCAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAG
CTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTAACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCC
GATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAACCCTGCAAACCCCTCCAAGCGAAGAAAAGATGAAAATAAGAAAAAGGAAGAAAATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCGACGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGC
CGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACACCCAACGACCCGCACAAGCAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAG
CTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTAACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCC
GATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAACCCTGCAAACCCCTCCAAGCGAAGAAAAGATGAAAATAAGAAAAAGGAAGAAAATCTAG
Protein sequenceShow/hide protein sequence
MAPLPGSDGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQP
DHANVSAISLRSGKTLQTPPSEEKMKIRKRKKI