CuGenDBv2

Gene ID	PI0003110
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerase subunit 10-like protein
Genome location	chr10:18585473..18586521
RNA-Seq Expression	PI0003110
Synteny	PI0003110
Gene Ontology terms	GO:0006360 - transcription by RNA polymerase I (biological process) GO:0006366 - transcription by RNA polymerase II (biological process) GO:0042797 - tRNA transcription by RNA polymerase III (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10 IPR020789 - RNA polymerases, subunit N, zinc binding site IPR023580 - RNA polymerase subunit RPB10

Homology

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GenBank top hits

e value

%identity

Alignment

GFP81349.1 DNA-directed RNA polymerase subunit 10-like protein [Phtheirospermum japonicum]

4.0e-28

86.49

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSIIYILLSLSL
        MIIPVRCFTCGKVIGNKWDTYLDLLQAD+ EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNS +++ LSLS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSIIYILLSLSL

XP_004135479.1 DNA-directed RNA polymerase subunit 10-like protein [Cucumis sativus]

1.1e-28

93.85

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI
        MIIPVRCFTCGKVIGNKWDTYLDLLQAD+PEGEALD+LGLVRYCCRRMLMTHVDLIEKLLNYN++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI

XP_008446194.1 PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Cucumis melo]

2.3e-28

93.85

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI
        MIIPVRCFTCGKVIGNKWDTYLDLLQAD+PEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYN++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI

XP_027347186.1 DNA-directed RNA polymerase subunit 10-like protein [Abrus precatorius]

4.0e-28

92.31

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI
        MIIPVRCFTCGKVIGNKWDTYLDLLQAD+PEG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYN++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI

XP_038893151.1 DNA-directed RNA polymerase subunit 10-like protein [Benincasa hispida]

3.1e-28

92.31

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI
        MIIPVRCFTCGKVIGNKWDTYL+LLQAD+PEGEALD+LGLVRYCCRRMLMTHVDLIEKLLNYN++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQ80 Uncharacterized protein

5.1e-29

93.85

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI
        MIIPVRCFTCGKVIGNKWDTYLDLLQAD+PEGEALD+LGLVRYCCRRMLMTHVDLIEKLLNYN++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI

A0A1S3BEG8 DNA-directed RNA polymerase subunit 10-like protein

1.1e-28

93.85

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI
        MIIPVRCFTCGKVIGNKWDTYLDLLQAD+PEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYN++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI

A0A2P6QFB0 Putative DNA-directed RNA polymerase transcription regulator Homeodomain-LIKE family

1.9e-28

92.31

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI
        MIIPVRCFTCGKVIGNKWDTYLDLLQAD+PEG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYN++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI

A0A5A7SYN0 DNA-directed RNA polymerase subunit 10-like protein

1.1e-28

93.85

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI
        MIIPVRCFTCGKVIGNKWDTYLDLLQAD+PEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYN++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI

D8QXA0 Uncharacterized protein

1.9e-28

95.31

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWDTYLDLLQAD+PE EALD LGLVRYCCRRMLMTHVDLIEKLLNYNS
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

SwissProt top hits

e value

%identity

Alignment

O13877 DNA-directed RNA polymerases I, II, and III subunit RPABC5

4.3e-25

78.46

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI
        MIIP+RCF+CGKVIG+KWDTYL LLQ D+ EGEALD LGL RYCCRRM++THVDLIEKLL YN +
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI

Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC5

3.2e-28

86.15

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI
        MIIPVRCFTCGKVIGNKWD YLDLLQ D+ EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYN++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI

Q55AB6 DNA-directed RNA polymerases I, II, and III subunit rpabc5

3.3e-25

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI
        MIIPVRCFTCGKVIGNKWD YL LLQ D+ EG+ALD L L RYCCRRML+THVDLIEKLLNY  +
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 10

7.1e-28

86.15

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI
        MIIPVRCFTCGKVIGNKWD YLDLLQ D+ EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYN++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein

2.2e-29

87.69

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI
        MI+PVRCFTCGKVIGNKWDTYL+LLQAD+ EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYN++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI

Arabidopsis top hits

e value

%identity

Alignment

AT1G11475.1 RNA polymerases N / 8 kDa subunit

5.0e-29

86.15

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI
        MIIPVRCFTCGKVIGNKWD YLDLLQ D+ EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYN++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI

AT1G61700.1 RNA polymerases N / 8 kDa subunit

1.6e-30

87.69

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI
        MI+PVRCFTCGKVIGNKWDTYL+LLQAD+ EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYN++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSI

Sequences

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CDS sequence

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ATGATAATTCCGGTGCGGTGCTTCACTTGCGGCAAGGTCATCGGTAACAAATGGGACACTTATCTCGACCTTCTACAAGCTGACCATCCAGAAGGGGAGGCATTGGATTT
GTTAGGGTTAGTACGGTACTGTTGTAGGAGAATGCTTATGACTCATGTGGATCTCATTGAGAAGCTCTTGAACTACAACAGTATAATATATATATTACTCTCTCTTTCTC
TAATTTATTCATTGTATATATATATATATGAATATGTGATTATGATTATTGTAATAATATTTTGCAGCCATGGATAA

mRNA sequence

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ATTTTTAAAATAATAATAATAATTAATTAATTAATTAATTAATTTATGTTGAGGCGAAGTTAGATATAAAATTAGGTTATGAAAAGGGAGCGAAGTAGTGGGAATTAGTT
TCCGAATTAGAAGGGTTTTATGAATTTAGGTTTAAAATAGGATACGGAAGTTAATTTAATGAAATTGGAGAAGCAAAGAGATTAAAGAAGATGATAATTCCGGTGCGGTG
CTTCACTTGCGGCAAGGTCATCGGTAACAAATGGGACACTTATCTCGACCTTCTACAAGCTGACCATCCAGAAGGGGAGGCATTGGATTTGTTAGGGTTAGTACGGTACT
GTTGTAGGAGAATGCTTATGACTCATGTGGATCTCATTGAGAAGCTCTTGAACTACAACAGTATAATATATATATTACTCTCTCTTTCTCTAATTTATTCATTGTATATA
TATATATATGAATATGTGATTATGATTATTGTAATAATATTTTGCAGCCATGGATAAGTCTGAAATCATCTAAAGCCTAATTACGGGGAATTGCTTTGCCAACACAATGA
ATTCTGCAATGAACTGTTTGAATTTTTTGAAGTTTTTATTTAGTTTTTGTAGACCTAATAAAGTTGTTGTGTACTTTCACATAGTTGAAATTCTTTAAAGTTTTGGATGG
AAATTGAGATGTTGAATTAGTTTACGGTAACCTACAATGAAAATGTTGTTTTAGATGAAGAGTATTTTTTAAACAAATGTTGAAGATGAAGGATATTTGTTATAGTCTAG
TTTTAATACCTTTATCGTCTTTTTATGCATGGAATCAAATGGTTGTTTTATTTAAAAA

Protein sequence

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MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSIIYILLSLSLIYSLYIYIYEYVIMIIVIIFCSHG

PI0003110 (gene) of Melon (PI 482460) v1 genome