CuGenDBv2

Gene ID	PI0003117
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Nucleolar protein 10
Genome location	chr04:20661834..20666451
RNA-Seq Expression	PI0003117
Synteny	PI0003117
Gene Ontology terms	GO:0010197 - polar nucleus fusion (biological process) GO:0031118 - rRNA pseudouridine synthesis (biological process) GO:0031120 - snRNA pseudouridine synthesis (biological process) GO:0015030 - Cajal body (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0031429 - box H/ACA snoRNP complex (cellular component) GO:0090661 - box H/ACA telomerase RNP complex (cellular component) GO:0034513 - box H/ACA snoRNA binding (molecular function) GO:0070034 - telomerase RNA binding (molecular function)
InterPro domains	IPR007264 - H/ACA ribonucleoprotein complex, subunit Nop10 IPR036756 - H/ACA ribonucleoprotein complex, subunit Nop10 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QCD97752.1 H/ACA ribonucleoprotein complex subunit 3 [Vigna unguiculata]

3.4e-28

98.44

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Query:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRV LKKRFGLLPTQQPPPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

XP_008447412.1 PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis melo]

9.0e-29

100

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Query:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

XP_011651438.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]

2.6e-28

98.44

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Query:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQFYIN+NGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

XP_015957125.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Arachis duranensis]

2.0e-28

98.44

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Query:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQFYINDNGDKVYTTKKE+PLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

XP_027917459.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Vigna unguiculata]

3.4e-28

98.44

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Query:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRV LKKRFGLLPTQQPPPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BHD2 Nucleolar protein 10

4.3e-29

100

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Query:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

A0A2P2IS35 Nucleolar protein 10

4.3e-29

100

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Query:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

A0A445DPP9 Nucleolar protein 10

9.7e-29

98.44

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Query:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQFYINDNGDKVYTTKKE+PLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

A0A6P4CV10 Nucleolar protein 10

9.7e-29

98.44

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Query:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQFYINDNGDKVYTTKKE+PLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

A0A7J7CYK9 Nucleolar protein 10

1.3e-28

98.44

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Query:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQFYIN+NGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

SwissProt top hits

e value

%identity

Alignment

Q6DRH5 H/ACA ribonucleoprotein complex subunit 3

1.0e-19

70.97

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Query:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        M+LQFY+N+NG++VYT KK  P G  T SAHPARFSPDDK+SR RV +KKRFGLL TQQP P
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

Q93XX8 H/ACA ribonucleoprotein complex subunit 3-like protein

2.8e-25

84.38

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Query:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQ YIN+ G+KVYTTKKESPLGLAT+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P +Y
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

Q9CQS2 H/ACA ribonucleoprotein complex subunit 3

2.5e-18

66.13

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Query:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        M+LQ+Y+N+ GD+VYT KK  P+G  T SAHPARFSPDDKYSR R+ +KKRF +L TQQP P
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

Q9NPE3 H/ACA ribonucleoprotein complex subunit 3

2.5e-18

66.13

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Query:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        M+LQ+Y+N+ GD+VYT KK  P+G  T SAHPARFSPDDKYSR R+ +KKRF +L TQQP P
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

Q9V5P6 H/ACA ribonucleoprotein complex subunit 3

3.3e-18

67.19

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Query:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYL + IN+NGD+VYT KK +  G  T SAHPARFSP+DKYSRQR+ +KKRFGLL TQ+P P Y
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

Arabidopsis top hits

e value

%identity

Alignment

AT2G20490.1 nucleolar RNA-binding Nop10p family protein

2.0e-26

84.38

Show/hide

Query:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQ YIN+ G+KVYTTKKESPLGLAT+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P +Y
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

AT2G20490.2 nucleolar RNA-binding Nop10p family protein

1.9e-24

82.81

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Query:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQ YIN+ G+KVYTT KESPLGLAT+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P +Y
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

Sequences

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CDS sequence

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ATGTATCTTCAGTTTTACATAAACGACAATGGTGATAAAGTCTACACCACAAAGAAGGAATCTCCTCTAGGTTTGGCCACACAATCTGCTCATCCAGCTCGTTTCTCCCC
CGATGACAAATATTCGAGGCAAAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTTCCTACACAGCAGCCACCTCCAAAGTACTGA

mRNA sequence

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AATATTATTTATAAGTCTTAAGAATTTCAAGAAACAACCGGTTTGGTCGGCTAACAGGTTTAGAAAGTAAAATTTCGGTTTAACTAAACCGAACCGGTTTATTATATATG
CAATTCTAGGTTTTCATTCTTCATTTGAGCAGCCGTCCTTAGTTCCTACCTCCCGTTCATTGGCGCGCCCCGCGGTCGTCCTCCGTAACACGCCCTTCGTCTTGTACCGC
CGTTGTTCGTTCTCGGTCTCGCCGCCGTTCGCCTTTTGTTGCACCTCTGTTCATCTCGTTGAGTGTCTATCAACGATGTATCTTCAGTTTTACATAAACGACAATGGTGA
TAAAGTCTACACCACAAAGAAGGAATCTCCTCTAGGTTTGGCCACACAATCTGCTCATCCAGCTCGTTTCTCCCCCGATGACAAATATTCGAGGCAAAGAGTTCTTCTTA
AGAAGCGATTTGGCTTGCTTCCTACACAGCAGCCACCTCCAAAGTACTGAACTCAATGCACGCTCAAATCACAACTCTATGGCAGTTTTCTCAAGTGTTTTTTTACCAGA
CCCCCATCAATAGTTAGATCGTGACTTGGTTAAACTTTGATAGATAGTTTCCTTTTTCTTTCTATGGCTTGTAATTGAGCTGTAAAGCACAATTCACTGTTGAACCTTTC
TTTAAGCTTGTCAATGGCTTTATGTTTGTATTGAACTTTATTTTACTGAAAGCAAACTTATCTACTTTGAAGATCTGGTTTTAATGCAAGATAATGGGCCTTTTTTCA

Protein sequence

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MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

PI0003117 (gene) of Melon (PI 482460) v1 genome