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PI0003153 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003153
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:16032948..16034442
RNA-Seq ExpressionPI0003153
SyntenyPI0003153
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]8.1e-4059.15Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP------------------------QIIKQQMSQ
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWG   N  H Q  P                        Q +KQQM+Q
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP------------------------QIIKQQMSQ

Query:  LTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK
        LT AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP ++EK
Subjt:  LTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK

KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-3958.16Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP-----------------------QIIKQQMSQL
        G  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWG   N  H Q  P                       Q +KQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP-----------------------QIIKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK
        T  +SK++GKGKLPAQPDH NVSAISLRSGKIL+TP ++EK
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK

KAA0038454.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-3959.15Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP------------------------QIIKQQMSQ
        G  +KV KCGVC L+GH NDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWG   N  H Q  P                        Q +KQQM+Q
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP------------------------QIIKQQMSQ

Query:  LTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK
        LT AISK++GKGKLPAQPDHANVSAISLRSGKIL TP ++EK
Subjt:  LTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK

KAA0051064.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-3959.15Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP------------------------QIIKQQMSQ
        G  +KV KCGVCGL+GHPNDKCP ++E+ N+ R+YDPHGNTYN+GWRDNPNLRWG   N  H Q  P                        Q +KQQM+Q
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP------------------------QIIKQQMSQ

Query:  LTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK
        LT AISK++GKGKL AQPDHANVSAISLRSGKIL+T  ++EK
Subjt:  LTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]1.4e-3958.45Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP------------------------QIIKQQMSQ
        G  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWG   N  H Q  P                        Q +KQQM+Q
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP------------------------QIIKQQMSQ

Query:  LTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK
        LT  ISK++GKGKLPAQPDH NVSAISLRSGKIL+TP ++EK
Subjt:  LTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032916.7e-4058.45Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP------------------------QIIKQQMSQ
        G  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWG   N  H Q  P                        Q +KQQM+Q
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP------------------------QIIKQQMSQ

Query:  LTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK
        LT  ISK++GKGKLPAQPDH NVSAISLRSGKIL+TP ++EK
Subjt:  LTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK

A0A5A7SQH8 Retrotransposon gag protein8.7e-4058.16Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP-----------------------QIIKQQMSQL
        G  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWG   N  H Q  P                       Q +KQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP-----------------------QIIKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK
        T  +SK++GKGKLPAQPDH NVSAISLRSGKIL+TP ++EK
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK

A0A5A7T4R3 Retrotransposon gag protein1.1e-3959.15Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP------------------------QIIKQQMSQ
        G  +KV KCGVC L+GH NDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWG   N  H Q  P                        Q +KQQM+Q
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP------------------------QIIKQQMSQ

Query:  LTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK
        LT AISK++GKGKLPAQPDHANVSAISLRSGKIL TP ++EK
Subjt:  LTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK

A0A5A7U6X0 Retrotransposon gag protein1.1e-3959.15Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP------------------------QIIKQQMSQ
        G  +KV KCGVCGL+GHPNDKCP ++E+ N+ R+YDPHGNTYN+GWRDNPNLRWG   N  H Q  P                        Q +KQQM+Q
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP------------------------QIIKQQMSQ

Query:  LTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK
        LT AISK++GKGKL AQPDHANVSAISLRSGKIL+T  ++EK
Subjt:  LTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK

E5GBZ4 Retrotransposon gag protein3.9e-4059.15Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP------------------------QIIKQQMSQ
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWG   N  H Q  P                        Q +KQQM+Q
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHP------------------------QIIKQQMSQ

Query:  LTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK
        LT AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP ++EK
Subjt:  LTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAATGACGCCCAACGACCCACACAAGCAACTTC
ATCCTCAAATAATCAAGCAACAAATGTCCCAATTGACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATC
TCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGTGAAGAAAAGGTACCTCTAACCCTACCCTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAATGACGCCCAACGACCCACACAAGCAACTTC
ATCCTCAAATAATCAAGCAACAAATGTCCCAATTGACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATC
TCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGTGAAGAAAAGGTACCTCTAACCCTACCCTTCTAG
Protein sequenceShow/hide protein sequence
MAPLPGSDGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHPQIIKQQMSQLTNAISKLEGKGKLPAQPDHANVSAI
SLRSGKILETPPSEEKVPLTLPF