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PI0003166 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003166
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationchr03:24112111..24116280
RNA-Seq ExpressionPI0003166
SyntenyPI0003166
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038951.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]8.3e-1443.2Show/hide
Query:  SIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNNRRLHDVADDPQQVLDIY---------------VPIVPPPVNRG
        +I  ++  ++ VS    DI++  +    + + T++                 +RSNN RL DVADDPQQVL+I                + IVPPPV+RG
Subjt:  SIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNNRRLHDVADDPQQVLDIY---------------VPIVPPPVNRG

Query:  RVRVEEPELDEVYHNVEEVPPVTQT
        RVRVEE ELDEVYHNVEEVPP TQT
Subjt:  RVRVEEPELDEVYHNVEEVPPVTQT

KAA0060115.1 uncharacterized protein E6C27_scaffold39G00340 [Cucumis melo var. makuwa]1.8e-1375.86Show/hide
Query:  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN
        M I NMVHLYVNVSR  LDINLNS+PFGQ EDRTQV+ PN E VASS+ DDEEM +NN
Subjt:  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN

KAA0062051.1 hypothetical protein E6C27_scaffold89G003910 [Cucumis melo var. makuwa]5.7e-1579.31Show/hide
Query:  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN
        M IPNMVHLYVNVSR  LDINLNSKPFGQ EDRTQV+ P+SE VASS+ DDEEM +NN
Subjt:  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN

KAA0066696.1 uncharacterized protein E6C27_scaffold271G00290 [Cucumis melo var. makuwa]1.8e-1375.86Show/hide
Query:  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN
        M IPNMVHLYVNVSR  LDINLNS+PF Q EDRTQV+ P+SE VASS+ DDEEM +NN
Subjt:  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN

TYK11193.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.4e-1344.8Show/hide
Query:  SIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNNRRLHDVADDPQQVLDIY---------------VPIVPPPVNRG
        +I  ++  ++ VS    DI++  +    + + T++    + P A+       +RSNN RL DVADDPQQVL+I                + IVPPPV+RG
Subjt:  SIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNNRRLHDVADDPQQVLDIY---------------VPIVPPPVNRG

Query:  RVRVEEPELDEVYHNVEEVPPVTQT
        RVRVEE ELDEVYHNVEEVPP TQT
Subjt:  RVRVEEPELDEVYHNVEEVPPVTQT

TrEMBL top hitse value%identityAlignment
A0A5A7TBF8 Mediator of RNA polymerase II transcription subunit 12-like isoform X14.0e-1443.2Show/hide
Query:  SIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNNRRLHDVADDPQQVLDIY---------------VPIVPPPVNRG
        +I  ++  ++ VS    DI++  +    + + T++                 +RSNN RL DVADDPQQVL+I                + IVPPPV+RG
Subjt:  SIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNNRRLHDVADDPQQVLDIY---------------VPIVPPPVNRG

Query:  RVRVEEPELDEVYHNVEEVPPVTQT
        RVRVEE ELDEVYHNVEEVPP TQT
Subjt:  RVRVEEPELDEVYHNVEEVPPVTQT

A0A5A7V2L1 Uncharacterized protein9.0e-1475.86Show/hide
Query:  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN
        M I NMVHLYVNVSR  LDINLNS+PFGQ EDRTQV+ PN E VASS+ DDEEM +NN
Subjt:  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN

A0A5A7V8N5 Uncharacterized protein2.8e-1579.31Show/hide
Query:  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN
        M IPNMVHLYVNVSR  LDINLNSKPFGQ EDRTQV+ P+SE VASS+ DDEEM +NN
Subjt:  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN

A0A5D3CH23 Mediator of RNA polymerase II transcription subunit 12-like isoform X16.9e-1444.8Show/hide
Query:  SIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNNRRLHDVADDPQQVLDIY---------------VPIVPPPVNRG
        +I  ++  ++ VS    DI++  +    + + T++    + P A+       +RSNN RL DVADDPQQVL+I                + IVPPPV+RG
Subjt:  SIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNNRRLHDVADDPQQVLDIY---------------VPIVPPPVNRG

Query:  RVRVEEPELDEVYHNVEEVPPVTQT
        RVRVEE ELDEVYHNVEEVPP TQT
Subjt:  RVRVEEPELDEVYHNVEEVPPVTQT

A0A5D3DVS6 Uncharacterized protein9.0e-1475.86Show/hide
Query:  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN
        M IPNMVHLYVNVSR  LDINLNS+PF Q EDRTQV+ P+SE VASS+ DDEEM +NN
Subjt:  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAATCCCGAACATGGTTCATCTATATGTGAATGTGAGCAGGACGAGTTTGGATATAAACTTGAATTCCAAACCATTCGGTCAGTTTGAAGATCGAACTCAGGTTGT
TGACCCTAATTCAGAACCAGTTGCATCGTCGATAAACGACGATGAAGAAATGAGATCAAACAACAGAAGACTTCATGATGTTGCAGATGATCCACAACAAGTCCTTGATA
TATATGTACCTATTGTGCCTCCACCAGTTAATAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCCAGTGACACAA
ACATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAATCCCGAACATGGTTCATCTATATGTGAATGTGAGCAGGACGAGTTTGGATATAAACTTGAATTCCAAACCATTCGGTCAGTTTGAAGATCGAACTCAGGTTGT
TGACCCTAATTCAGAACCAGTTGCATCGTCGATAAACGACGATGAAGAAATGAGATCAAACAACAGAAGACTTCATGATGTTGCAGATGATCCACAACAAGTCCTTGATA
TATATGTACCTATTGTGCCTCCACCAGTTAATAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCCAGTGACACAA
ACATAG
Protein sequenceShow/hide protein sequence
MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNNRRLHDVADDPQQVLDIYVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQ
T