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PI0003185 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003185
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr01:11428148..11428828
RNA-Seq ExpressionPI0003185
SyntenyPI0003185
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.9e-3233.63Show/hide
Query:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPK------------------------
        +NCLGALDD YIKV VSA DRPRY TRKG+V+ NVLGVCDTK DFVFVL+GWE SA DSRILRD ISR NGL+VPK                        
Subjt:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPK------------------------

Query:  --------------------------------------------------------------------------------DSISQQGTTTYAMTG-----
                                                                                        D +  +G +TYA TG     
Subjt:  --------------------------------------------------------------------------------DSISQQGTTTYAMTG-----

Query:  ------------------------------------------AHAKTFVDVGSNVPEGFEG-FPTDYGNYTEIPMMYNQGLDMSPD--------------
                                                  A ++TF DVGSNVP  F G  P D  +  +IPMMY+QG+ MSPD              
Subjt:  ------------------------------------------AHAKTFVDVGSNVPEGFEG-FPTDYGNYTEIPMMYNQGLDMSPD--------------

Query:  --GGGSKRKRGGQAAQTVEIIQNAMDFANDQLKAIA
            GSKRK+G +  +TVE+I++A++F NDQLKAIA
Subjt:  --GGGSKRKRGGQAAQTVEIIQNAMDFANDQLKAIA

KAA0050755.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]9.6e-2939.57Show/hide
Query:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPKD---------------SISQQGTT
        +N L  LD  YIKV VSA DRPRYRTRKG+V+TNVL VCDTK DFVFVL+ WE SA DSRILRD ISR   L+V K                 +  +   
Subjt:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPKD---------------SISQQGTT

Query:  TYAM--------------------------------TGAHAKTFVDVGSNVPEGF-EGFPTDYGNYTEIPMMYNQGLDMSPD----------------GG
        T+ +                                  A  +TF +VGSNV   F +  P D  +  +IP MY+QG+ MSPD                  
Subjt:  TYAM--------------------------------TGAHAKTFVDVGSNVPEGF-EGFPTDYGNYTEIPMMYNQGLDMSPD----------------GG

Query:  GSKRKRGGQAAQTVEIIQNAM-DFANDQLK
        GSKRKR  +  +TVE+I++A+ DF N+ +K
Subjt:  GSKRKRGGQAAQTVEIIQNAM-DFANDQLK

KAA0056515.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]8.7e-3036.51Show/hide
Query:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPKDSISQQGTTTYAM-----------
        +NC G LDD YIKV V+A +RPRY+T+KG+V+TNVLGVCDTK DFVFVL+ W+ S  DSRIL+D ISR N L+V K  +       Y +           
Subjt:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPKDSISQQGTTTYAM-----------

Query:  --------------------------------------------------------TGAHAKTFVDVGSNVPEGF-EGFPTDYGNYTEIPMMYNQGLDMS
                                                                T   ++TF  VGSNVP  F +G P    +  +IPMMY+QG+ MS
Subjt:  --------------------------------------------------------TGAHAKTFVDVGSNVPEGF-EGFPTDYGNYTEIPMMYNQGLDMS

Query:  PD----------------GGGSKRKRGGQAAQTVEIIQNAMDFANDQLKAIA
         D                  GSKRKRG +  + VE+I++ M F N+QLK IA
Subjt:  PD----------------GGGSKRKRGGQAAQTVEIIQNAMDFANDQLKAIA

KAA0065769.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]9.6e-3753.63Show/hide
Query:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPK-DSISQQGTTTYAM---------T
        +NCLG LDD YIKV VSA D PRYRTRKG+V+TNVLGV DT DDFVFVL+GWE S  DSRILRD+I R N L+V K D ++      Y +         T
Subjt:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPK-DSISQQGTTTYAM---------T

Query:  GAHAKTFVDVGSNVPEGF-EGFPTDYGNYTEIPMMYNQGLDMSPDGGGSKRKRGGQAAQTVEIIQNAMDFANDQLKAIA
        GA ++TFVD  SNVP  F +G P    ++ +IP +Y+QG+ MS D      K  G  A   E+I++AM+F NDQLKAIA
Subjt:  GAHAKTFVDVGSNVPEGF-EGFPTDYGNYTEIPMMYNQGLDMSPDGGGSKRKRGGQAAQTVEIIQNAMDFANDQLKAIA

KAA0067183.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.7e-3350.83Show/hide
Query:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLR-------VPKDSISQQGTTTYA-----
        +NCLGALD  YIKV VSA DRPRYRTRKG V TNVLGVCD K DFVFVL+ WE SATDSRIL+D ISR NGL+       +   S       +Y      
Subjt:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLR-------VPKDSISQQGTTTYA-----

Query:  MTGAHAKTFVDVGSNVPEGF-EGFPTDYGNYTEIPMMYNQGLDMSPDGGGSKRKRGGQAAQTVEIIQNAMDFANDQLKAIA
        +T   + TFV+VGSNVP  F +          +IPMMY+QG+ MSPD     R          E+ ++ M+  NDQLKAIA
Subjt:  MTGAHAKTFVDVGSNVPEGF-EGFPTDYGNYTEIPMMYNQGLDMSPDGGGSKRKRGGQAAQTVEIIQNAMDFANDQLKAIA

TrEMBL top hitse value%identityAlignment
A0A5A7SQU2 Putative nuclease HARBI19.1e-3333.63Show/hide
Query:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPK------------------------
        +NCLGALDD YIKV VSA DRPRY TRKG+V+ NVLGVCDTK DFVFVL+GWE SA DSRILRD ISR NGL+VPK                        
Subjt:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPK------------------------

Query:  --------------------------------------------------------------------------------DSISQQGTTTYAMTG-----
                                                                                        D +  +G +TYA TG     
Subjt:  --------------------------------------------------------------------------------DSISQQGTTTYAMTG-----

Query:  ------------------------------------------AHAKTFVDVGSNVPEGFEG-FPTDYGNYTEIPMMYNQGLDMSPD--------------
                                                  A ++TF DVGSNVP  F G  P D  +  +IPMMY+QG+ MSPD              
Subjt:  ------------------------------------------AHAKTFVDVGSNVPEGFEG-FPTDYGNYTEIPMMYNQGLDMSPD--------------

Query:  --GGGSKRKRGGQAAQTVEIIQNAMDFANDQLKAIA
            GSKRK+G +  +TVE+I++A++F NDQLKAIA
Subjt:  --GGGSKRKRGGQAAQTVEIIQNAMDFANDQLKAIA

A0A5A7UAW6 Putative nuclease HARBI14.6e-2939.57Show/hide
Query:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPKD---------------SISQQGTT
        +N L  LD  YIKV VSA DRPRYRTRKG+V+TNVL VCDTK DFVFVL+ WE SA DSRILRD ISR   L+V K                 +  +   
Subjt:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPKD---------------SISQQGTT

Query:  TYAM--------------------------------TGAHAKTFVDVGSNVPEGF-EGFPTDYGNYTEIPMMYNQGLDMSPD----------------GG
        T+ +                                  A  +TF +VGSNV   F +  P D  +  +IP MY+QG+ MSPD                  
Subjt:  TYAM--------------------------------TGAHAKTFVDVGSNVPEGF-EGFPTDYGNYTEIPMMYNQGLDMSPD----------------GG

Query:  GSKRKRGGQAAQTVEIIQNAM-DFANDQLK
        GSKRKR  +  +TVE+I++A+ DF N+ +K
Subjt:  GSKRKRGGQAAQTVEIIQNAM-DFANDQLK

A0A5A7USN6 Putative nuclease HARBI14.2e-3036.51Show/hide
Query:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPKDSISQQGTTTYAM-----------
        +NC G LDD YIKV V+A +RPRY+T+KG+V+TNVLGVCDTK DFVFVL+ W+ S  DSRIL+D ISR N L+V K  +       Y +           
Subjt:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPKDSISQQGTTTYAM-----------

Query:  --------------------------------------------------------TGAHAKTFVDVGSNVPEGF-EGFPTDYGNYTEIPMMYNQGLDMS
                                                                T   ++TF  VGSNVP  F +G P    +  +IPMMY+QG+ MS
Subjt:  --------------------------------------------------------TGAHAKTFVDVGSNVPEGF-EGFPTDYGNYTEIPMMYNQGLDMS

Query:  PD----------------GGGSKRKRGGQAAQTVEIIQNAMDFANDQLKAIA
         D                  GSKRKRG +  + VE+I++ M F N+QLK IA
Subjt:  PD----------------GGGSKRKRGGQAAQTVEIIQNAMDFANDQLKAIA

A0A5A7VGH2 Putative nuclease HARBI18.2e-3450.83Show/hide
Query:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLR-------VPKDSISQQGTTTYA-----
        +NCLGALD  YIKV VSA DRPRYRTRKG V TNVLGVCD K DFVFVL+ WE SATDSRIL+D ISR NGL+       +   S       +Y      
Subjt:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLR-------VPKDSISQQGTTTYA-----

Query:  MTGAHAKTFVDVGSNVPEGF-EGFPTDYGNYTEIPMMYNQGLDMSPDGGGSKRKRGGQAAQTVEIIQNAMDFANDQLKAIA
        +T   + TFV+VGSNVP  F +          +IPMMY+QG+ MSPD     R          E+ ++ M+  NDQLKAIA
Subjt:  MTGAHAKTFVDVGSNVPEGF-EGFPTDYGNYTEIPMMYNQGLDMSPDGGGSKRKRGGQAAQTVEIIQNAMDFANDQLKAIA

A0A5D3BBW3 Putative nuclease HARBI14.6e-3753.63Show/hide
Query:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPK-DSISQQGTTTYAM---------T
        +NCLG LDD YIKV VSA D PRYRTRKG+V+TNVLGV DT DDFVFVL+GWE S  DSRILRD+I R N L+V K D ++      Y +         T
Subjt:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPK-DSISQQGTTTYAM---------T

Query:  GAHAKTFVDVGSNVPEGF-EGFPTDYGNYTEIPMMYNQGLDMSPDGGGSKRKRGGQAAQTVEIIQNAMDFANDQLKAIA
        GA ++TFVD  SNVP  F +G P    ++ +IP +Y+QG+ MS D      K  G  A   E+I++AM+F NDQLKAIA
Subjt:  GAHAKTFVDVGSNVPEGF-EGFPTDYGNYTEIPMMYNQGLDMSPDGGGSKRKRGGQAAQTVEIIQNAMDFANDQLKAIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G28950.1 unknown protein3.2e-1442.17Show/hide
Query:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISR-PNGLRVPKDSISQQ
        ++C+GA+DD +I   VS    P +R RKG +S N+L  C+   +F++VL+GWE SA DS++L D ++R  N L VP++  S +
Subjt:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISR-PNGLRVPKDSISQQ

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)5.3e-0935.53Show/hide
Query:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPK
        ++C+G +D  +I V V   ++  +R   G ++ NVL        F +VLAGWE SA+D ++L   ++R N L+VP+
Subjt:  QNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTGGTTTCAGGTAGGGTACTTTATGAATGGTCGTTACTTGGACACATTTACCTCTACGGTTTGCATATTTACGATCTTCGTACAATGCAGAATTGCCTAGGTGC
GTTAGATGACATATACATAAAGGTAAAAGTAAGTGCAGCTGATCGTCCGAGGTATAGGACACGAAAGGGTAAAGTTTCCACGAACGTCCTAGGTGTATGTGATACGAAAG
ACGATTTTGTGTTCGTCTTAGCTGGTTGGGAAAGGTCCGCAACGGATTCTCGCATCCTTAGAGATGATATTTCAAGGCCTAATGGACTAAGGGTTCCGAAGGATTCGATA
TCCCAACAGGGTACTACTACCTATGCGATGACGGGAGCTCACGCGAAGACATTCGTCGACGTTGGGTCGAATGTGCCTGAAGGGTTCGAGGGATTTCCCACTGATTATGG
AAACTATACGGAGATTCCTATGATGTACAATCAGGGACTAGACATGTCACCTGATGGAGGCGGATCAAAGAGGAAGCGAGGAGGCCAGGCAGCACAGACTGTCGAAATCA
TTCAGAATGCAATGGACTTCGCCAATGACCAGTTGAAGGCCATTGCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTGGTTTCAGGTAGGGTACTTTATGAATGGTCGTTACTTGGACACATTTACCTCTACGGTTTGCATATTTACGATCTTCGTACAATGCAGAATTGCCTAGGTGC
GTTAGATGACATATACATAAAGGTAAAAGTAAGTGCAGCTGATCGTCCGAGGTATAGGACACGAAAGGGTAAAGTTTCCACGAACGTCCTAGGTGTATGTGATACGAAAG
ACGATTTTGTGTTCGTCTTAGCTGGTTGGGAAAGGTCCGCAACGGATTCTCGCATCCTTAGAGATGATATTTCAAGGCCTAATGGACTAAGGGTTCCGAAGGATTCGATA
TCCCAACAGGGTACTACTACCTATGCGATGACGGGAGCTCACGCGAAGACATTCGTCGACGTTGGGTCGAATGTGCCTGAAGGGTTCGAGGGATTTCCCACTGATTATGG
AAACTATACGGAGATTCCTATGATGTACAATCAGGGACTAGACATGTCACCTGATGGAGGCGGATCAAAGAGGAAGCGAGGAGGCCAGGCAGCACAGACTGTCGAAATCA
TTCAGAATGCAATGGACTTCGCCAATGACCAGTTGAAGGCCATTGCGTAG
Protein sequenceShow/hide protein sequence
MEVVSGRVLYEWSLLGHIYLYGLHIYDLRTMQNCLGALDDIYIKVKVSAADRPRYRTRKGKVSTNVLGVCDTKDDFVFVLAGWERSATDSRILRDDISRPNGLRVPKDSI
SQQGTTTYAMTGAHAKTFVDVGSNVPEGFEGFPTDYGNYTEIPMMYNQGLDMSPDGGGSKRKRGGQAAQTVEIIQNAMDFANDQLKAIA