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PI0003199 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003199
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:19142992..19144344
RNA-Seq ExpressionPI0003199
SyntenyPI0003199
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.9e-3671.43Show/hide
Query:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
        G  +KV KCGVC L+GHPNDKCP+++E+VN++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++
Subjt:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-3773.47Show/hide
Query:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
        G  +KV KCGVC L+GHPNDKCP+++E+VN++RKYDPH NTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ EMKQQ++
Subjt:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
KAA0050529.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.1e-3771.43Show/hide
Query:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
        G  +KV KCGVCCL+GHPNDKCP+++E+VN++RKYDPH NTYN GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++KAL T T+SFQ EMKQQ++
Subjt:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-3671.43Show/hide
Query:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
        G  +KV KCGVC L+GHPNDKCP+++E+VN+++KYDPH NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++
Subjt:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]1.1e-3671.43Show/hide
Query:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
        G  +KV KCGVC L+GHPNDKCP+++E+VN+++KYDPH NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++
Subjt:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919105.5e-3771.43Show/hide
Query:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
        G  +KV KCGVC L+GHPNDKCP+++E+VN+++KYDPH NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++
Subjt:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
A0A5A7UAL2 Retrotransposon gag protein2.5e-3771.43Show/hide
Query:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
        G  +KV KCGVCCL+GHPNDKCP+++E+VN++RKYDPH NTYN GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++KAL T T+SFQ EMKQQ++
Subjt:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
A0A5D3CRR8 Retrotransposon gag protein5.0e-3873.47Show/hide
Query:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
        G  +KV KCGVC L+GHPNDKCP+++E+VN++RKYDPH NTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ EMKQQ++
Subjt:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
A0A5D3DCG3 Retrotransposon gag protein5.5e-3771.43Show/hide
Query:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
        G  +KV KCGVC L+GHPNDKCP+++E+VN+++KYDPH NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++
Subjt:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
E5GBZ4 Retrotransposon gag protein9.4e-3771.43Show/hide
Query:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
        G  +KV KCGVC L+GHPNDKCP+++E+VN++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++
Subjt:  GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGTCGGGGAGCGACGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGTTGTTTAATTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGT
AAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACAACCAACGACCCGCACAAGCAACTT
CATCTTCAAATAATCAAGGTACAAATTTGGAAGACTTAGTAAAAGCTCTTGCTACTAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATATCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGTCGGGGAGCGACGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGTTGTTTAATTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGT
AAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACAACCAACGACCCGCACAAGCAACTT
CATCTTCAAATAATCAAGGTACAAATTTGGAAGACTTAGTAAAAGCTCTTGCTACTAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATATCTTAA
Protein sequenceShow/hide protein sequence
MAPLSGSDGGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS