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PI0003213 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003213
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr10:5339767..5340146
RNA-Seq ExpressionPI0003213
SyntenyPI0003213
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052859.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.5e-3473.21Show/hide
Query:  MKMKESEGVSDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTIDELA--------KKKTTISHRGGLTNKDNHQRRQG
        MK+KESE VSDY T+VQTVVNQLK NG+T KD R+V+KILRSLTNDF+NVVCAIE+ KNLEEMTI EL         +KK T   RGGLTNKD+HQRRQG
Subjt:  MKMKESEGVSDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTIDELA--------KKKTTISHRGGLTNKDNHQRRQG

Query:  NVCTTQSRKRTW
        NVCTTQSRK+TW
Subjt:  NVCTTQSRKRTW

KAA0060771.1 polyprotein [Cucumis melo var. makuwa]6.4e-2566.04Show/hide
Query:  SDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTI-----------DELAKKKTTISHRGGLTNKDNHQRRQGNVCTTQ
        +D   + Q VVNQLK NG+TLKDARVV+KI  SLTNDFENVVCA EESKNLEEMT             E  +KKTT     G+TNKD+HQRRQGNVCTTQ
Subjt:  SDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTI-----------DELAKKKTTISHRGGLTNKDNHQRRQGNVCTTQ

Query:  SRKRTW
        SRKRTW
Subjt:  SRKRTW

KAE8672005.1 hypothetical protein F3Y22_tig00111877pilonHSYRG00353 [Hibiscus syriacus]3.0e-2272.73Show/hide
Query:  MKMKESEGVSDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTIDEL-----AKKKTTISHRGGLTN
        M MKESEGVSDY T VQTVVNQLK NGETLKD+RVV+KILRSLT+DFENVVCAIEESK+LEE+TID L     A ++   S RGG +N
Subjt:  MKMKESEGVSDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTIDEL-----AKKKTTISHRGGLTN

KAE8732520.1 Detected protein of unknown function [Hibiscus syriacus]6.6e-2285.51Show/hide
Query:  MKMKESEGVSDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTIDELA
        MKMKESEGVSD  TRVQTVVNQLK  GETLKD+RVV+KILRSLT+DFENVVCAIEESK+LEE+TID+LA
Subjt:  MKMKESEGVSDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTIDELA

XP_038878101.1 uncharacterized protein LOC120070273 isoform X4 [Benincasa hispida]1.1e-2185.51Show/hide
Query:  MKMKESEGVSDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTIDELA
        MKMKESE VS Y TRVQTVVNQLK NGETL+DA+VV+KILRSLTNDF+NVVCAIEESK LEEMTID+LA
Subjt:  MKMKESEGVSDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTIDELA

TrEMBL top hitse value%identityAlignment
A0A5D3C1S7 Retrovirus-related Pol polyprotein from transposon TNT 1-943.7e-3473.21Show/hide
Query:  MKMKESEGVSDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTIDELA--------KKKTTISHRGGLTNKDNHQRRQG
        MK+KESE VSDY T+VQTVVNQLK NG+T KD R+V+KILRSLTNDF+NVVCAIE+ KNLEEMTI EL         +KK T   RGGLTNKD+HQRRQG
Subjt:  MKMKESEGVSDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTIDELA--------KKKTTISHRGGLTNKDNHQRRQG

Query:  NVCTTQSRKRTW
        NVCTTQSRK+TW
Subjt:  NVCTTQSRKRTW

A0A5D3CND8 Polyprotein3.1e-2566.04Show/hide
Query:  SDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTI-----------DELAKKKTTISHRGGLTNKDNHQRRQGNVCTTQ
        +D   + Q VVNQLK NG+TLKDARVV+KI  SLTNDFENVVCA EESKNLEEMT             E  +KKTT     G+TNKD+HQRRQGNVCTTQ
Subjt:  SDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTI-----------DELAKKKTTISHRGGLTNKDNHQRRQGNVCTTQ

Query:  SRKRTW
        SRKRTW
Subjt:  SRKRTW

A0A6A2XY19 Integrase catalytic domain-containing protein1.4e-2272.73Show/hide
Query:  MKMKESEGVSDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTIDEL-----AKKKTTISHRGGLTN
        M MKESEGVSDY T VQTVVNQLK NGETLKD+RVV+KILRSLT+DFENVVCAIEESK+LEE+TID L     A ++   S RGG +N
Subjt:  MKMKESEGVSDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTIDEL-----AKKKTTISHRGGLTN

A0A6A3AQY9 CCHC-type domain-containing protein7.1e-2282.86Show/hide
Query:  MKMKESEGVSDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTIDELAK
        MKMKE EGV DY TRVQTVVNQLK NGETLKD+RVV+KILRSLT+DFENVVCAIE SK+LEE+TID+LA+
Subjt:  MKMKESEGVSDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTIDELAK

A0A6A3CTC0 Integrase catalytic domain-containing protein3.2e-2285.51Show/hide
Query:  MKMKESEGVSDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTIDELA
        MKMKESEGVSD  TRVQTVVNQLK  GETLKD+RVV+KILRSLT+DFENVVCAIEESK+LEE+TID+LA
Subjt:  MKMKESEGVSDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTIDELA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATGAAAGAGTCAGAAGGAGTATCTGACTACTTCACCCGGGTTCAAACGGTGGTGAACCAACTTAAACTCAATGGAGAAACCCTCAAAGATGCCAGGGTTGTGGA
CAAAATCCTTCGATCATTGACAAATGACTTTGAAAATGTGGTATGTGCAATCGAGGAGTCAAAGAATTTGGAAGAAATGACTATTGATGAACTTGCAAAAAAAAAGACAA
CAATAAGTCATAGAGGGGGCCTTACAAACAAAGATAACCATCAAAGAAGACAAGGCAATGTATGCACAACACAATCGAGGAAGAGGACGTGGCAGTTTCAGTCGCGACAA
AGGTCATGGTCGTGGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATGAAAGAGTCAGAAGGAGTATCTGACTACTTCACCCGGGTTCAAACGGTGGTGAACCAACTTAAACTCAATGGAGAAACCCTCAAAGATGCCAGGGTTGTGGA
CAAAATCCTTCGATCATTGACAAATGACTTTGAAAATGTGGTATGTGCAATCGAGGAGTCAAAGAATTTGGAAGAAATGACTATTGATGAACTTGCAAAAAAAAAGACAA
CAATAAGTCATAGAGGGGGCCTTACAAACAAAGATAACCATCAAAGAAGACAAGGCAATGTATGCACAACACAATCGAGGAAGAGGACGTGGCAGTTTCAGTCGCGACAA
AGGTCATGGTCGTGGAAATAA
Protein sequenceShow/hide protein sequence
MKMKESEGVSDYFTRVQTVVNQLKLNGETLKDARVVDKILRSLTNDFENVVCAIEESKNLEEMTIDELAKKKTTISHRGGLTNKDNHQRRQGNVCTTQSRKRTWQFQSRQ
RSWSWK