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PI0003224 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003224
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRT_RNaseH_2 domain-containing protein
Genome locationchr09:14695348..14696031
RNA-Seq ExpressionPI0003224
SyntenyPI0003224
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040852.1 hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa]1.3e-1941.85Show/hide
Query:  MAILQVNTASSSIEVVNQVDDMGYVRCSGPHNTDAC----------------------DPRGEASDYHPRHHNNKSQYLPHQQQNTTATLSSSSSSSMKN
        MA+ QV+   + ++ V QVD+M  V C  PH TDAC                      + RGEA D+  RH++      P  QQ TT T   SS SSM  
Subjt:  MAILQVNTASSSIEVVNQVDDMGYVRCSGPHNTDAC----------------------DPRGEASDYHPRHHNNKSQYLPHQQQNTTATLSSSSSSSMKN

Query:  LLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGSLPSNTETPNRAGGSKKYQCHAMTLRRRRNFTIRDPESERRTST
        LL +YMQ+ DA +Q+Q TSI NL++ LGQLA DFS RP GSLPSN E PN   G  K +   M + RR      D  S + TS+
Subjt:  LLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGSLPSNTETPNRAGGSKKYQCHAMTLRRRRNFTIRDPESERRTST

KAA0041246.1 uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa]1.5e-2063.33Show/hide
Query:  NLLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGSLPSNTETPNRAGGSKKYQCHAMTLRRRRNFTIRDPESERRTSTSSPDT
        N +    Q NDALLQ+QA+SI+NL++QLGQL S+ SRRP+GSLPSNTETPN+ GGS K +C  +TLR RRN TIR+P+ ERR STS+  T
Subjt:  NLLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGSLPSNTETPNRAGGSKKYQCHAMTLRRRRNFTIRDPESERRTSTSSPDT

KGN51008.1 hypothetical protein Csa_008461 [Cucumis sativus]9.4e-1555.81Show/hide
Query:  SSSMKNLLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGSLPSNTETPNRAGGSKKYQCHAMTLRRRRNFTIRDPESER
        +  M+ L  EYMQ+NDALLQ+QA+SI+NL++QLGQLA+D S RP+G+L  NT+TP + GGS   +   +TLR RRN TI + ESE+
Subjt:  SSSMKNLLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGSLPSNTETPNRAGGSKKYQCHAMTLRRRRNFTIRDPESER

TYK27798.1 hypothetical protein E5676_scaffold749G00200 [Cucumis melo var. makuwa]5.9e-1753.45Show/hide
Query:  GYVRCSGPHNTDACDP--RGEASDYHPRHHNNKSQY-LPHQQQNTTATLSSSSSSSMKNLLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGS
        G VRC  P N D       G+AS Y  R H ++  +  P QQQ TT T   S SSSM+ L+  YM++NDALLQ+QATSIRNL++Q+GQ+A DFS RP+  
Subjt:  GYVRCSGPHNTDACDP--RGEASDYHPRHHNNKSQY-LPHQQQNTTATLSSSSSSSMKNLLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGS

Query:  LPSNTETPNRAGGSKK
        LPSNTE  N+AG  KK
Subjt:  LPSNTETPNRAGGSKK

WP_217833224.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]1.1e-1568.06Show/hide
Query:  SSSMKNLLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGSLPSNTETPNRAGGSKKYQCHAMTLR
        SSSM+ LL EYMQKNDAL+Q QA+SIRNLK+QLGQ+A +F  R +GSLPSNTE P   G S K QC A+TLR
Subjt:  SSSMKNLLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGSLPSNTETPNRAGGSKKYQCHAMTLR

TrEMBL top hitse value%identityAlignment
A0A0A0KMN3 Uncharacterized protein2.4e-2448.3Show/hide
Query:  MAILQVNTASSSIEVVNQVDDMGYVRCSGPHNTDACDPRGEASDYHPRHHN----NKSQYLPHQQQNTTATLSSSSSSSMKNLLCEYMQKNDALLQNQAT
        MA+L+VN A SS+++V+Q  ++G+V C GP         GE S Y PR ++       Q+L H   N + + SSSS  SM++L  EYMQ+NDALLQ+QA 
Subjt:  MAILQVNTASSSIEVVNQVDDMGYVRCSGPHNTDACDPRGEASDYHPRHHN----NKSQYLPHQQQNTTATLSSSSSSSMKNLLCEYMQKNDALLQNQAT

Query:  SIRNLKVQLGQLASDFSRRPRGSLPSNTETPNRAGGSKKYQCHAMTL
        SI+NL++Q+GQ+A+D SR+P+G+LPSNTE P + G S K +C A+TL
Subjt:  SIRNLKVQLGQLASDFSRRPRGSLPSNTETPNRAGGSKKYQCHAMTL

A0A0A0KN83 Uncharacterized protein4.5e-1555.81Show/hide
Query:  SSSMKNLLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGSLPSNTETPNRAGGSKKYQCHAMTLRRRRNFTIRDPESER
        +  M+ L  EYMQ+NDALLQ+QA+SI+NL++QLGQLA+D S RP+G+L  NT+TP + GGS   +   +TLR RRN TI + ESE+
Subjt:  SSSMKNLLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGSLPSNTETPNRAGGSKKYQCHAMTLRRRRNFTIRDPESER

A0A5A7TGS2 Uncharacterized protein7.2e-2163.33Show/hide
Query:  NLLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGSLPSNTETPNRAGGSKKYQCHAMTLRRRRNFTIRDPESERRTSTSSPDT
        N +    Q NDALLQ+QA+SI+NL++QLGQL S+ SRRP+GSLPSNTETPN+ GGS K +C  +TLR RRN TIR+P+ ERR STS+  T
Subjt:  NLLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGSLPSNTETPNRAGGSKKYQCHAMTLRRRRNFTIRDPESERRTSTSSPDT

A0A5D3D2S0 Uncharacterized protein6.1e-2041.85Show/hide
Query:  MAILQVNTASSSIEVVNQVDDMGYVRCSGPHNTDAC----------------------DPRGEASDYHPRHHNNKSQYLPHQQQNTTATLSSSSSSSMKN
        MA+ QV+   + ++ V QVD+M  V C  PH TDAC                      + RGEA D+  RH++      P  QQ TT T   SS SSM  
Subjt:  MAILQVNTASSSIEVVNQVDDMGYVRCSGPHNTDAC----------------------DPRGEASDYHPRHHNNKSQYLPHQQQNTTATLSSSSSSSMKN

Query:  LLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGSLPSNTETPNRAGGSKKYQCHAMTLRRRRNFTIRDPESERRTST
        LL +YMQ+ DA +Q+Q TSI NL++ LGQLA DFS RP GSLPSN E PN   G  K +   M + RR      D  S + TS+
Subjt:  LLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGSLPSNTETPNRAGGSKKYQCHAMTLRRRRNFTIRDPESERRTST

A0A5D3DWD5 Uncharacterized protein2.8e-1753.45Show/hide
Query:  GYVRCSGPHNTDACDP--RGEASDYHPRHHNNKSQY-LPHQQQNTTATLSSSSSSSMKNLLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGS
        G VRC  P N D       G+AS Y  R H ++  +  P QQQ TT T   S SSSM+ L+  YM++NDALLQ+QATSIRNL++Q+GQ+A DFS RP+  
Subjt:  GYVRCSGPHNTDACDP--RGEASDYHPRHHNNKSQY-LPHQQQNTTATLSSSSSSSMKNLLCEYMQKNDALLQNQATSIRNLKVQLGQLASDFSRRPRGS

Query:  LPSNTETPNRAGGSKK
        LPSNTE  N+AG  KK
Subjt:  LPSNTETPNRAGGSKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAATTTTGCAAGTTAACACCGCAAGTAGCTCTATTGAAGTAGTTAATCAAGTGGACGATATGGGATACGTGAGATGCAGCGGTCCTCACAATACCGATGCATGTGA
CCCTCGCGGTGAAGCATCTGACTATCACCCAAGACATCACAACAATAAATCACAATATCTCCCGCACCAACAACAGAACACCACCGCTACTCTATCCTCATCCTCATCCT
CATCGATGAAGAACCTTCTTTGCGAATACATGCAGAAAAATGATGCTCTTCTGCAAAATCAAGCCACATCCATTCGTAATCTGAAAGTACAATTGGGACAGTTAGCTAGC
GATTTCTCCAGAAGACCAAGGGGATCTCTCCCTAGTAATACTGAAACACCAAACCGGGCGGGGGGTTCCAAAAAATACCAATGTCATGCGATGACATTGAGAAGAAGAAG
AAATTTTACCATCCGCGACCCAGAATCAGAACGTAGAACTTCTACTTCTAGTCCTGACACCATGAATGACAATCTGATAACTCGTATTTTATACAAGTTATTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAATTTTGCAAGTTAACACCGCAAGTAGCTCTATTGAAGTAGTTAATCAAGTGGACGATATGGGATACGTGAGATGCAGCGGTCCTCACAATACCGATGCATGTGA
CCCTCGCGGTGAAGCATCTGACTATCACCCAAGACATCACAACAATAAATCACAATATCTCCCGCACCAACAACAGAACACCACCGCTACTCTATCCTCATCCTCATCCT
CATCGATGAAGAACCTTCTTTGCGAATACATGCAGAAAAATGATGCTCTTCTGCAAAATCAAGCCACATCCATTCGTAATCTGAAAGTACAATTGGGACAGTTAGCTAGC
GATTTCTCCAGAAGACCAAGGGGATCTCTCCCTAGTAATACTGAAACACCAAACCGGGCGGGGGGTTCCAAAAAATACCAATGTCATGCGATGACATTGAGAAGAAGAAG
AAATTTTACCATCCGCGACCCAGAATCAGAACGTAGAACTTCTACTTCTAGTCCTGACACCATGAATGACAATCTGATAACTCGTATTTTATACAAGTTATTATAG
Protein sequenceShow/hide protein sequence
MAILQVNTASSSIEVVNQVDDMGYVRCSGPHNTDACDPRGEASDYHPRHHNNKSQYLPHQQQNTTATLSSSSSSSMKNLLCEYMQKNDALLQNQATSIRNLKVQLGQLAS
DFSRRPRGSLPSNTETPNRAGGSKKYQCHAMTLRRRRNFTIRDPESERRTSTSSPDTMNDNLITRILYKLL