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PI0003251 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003251
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr01:6466909..6467334
RNA-Seq ExpressionPI0003251
SyntenyPI0003251
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050409.1 hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa]4.4e-5276.69Show/hide
Query:  MLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKY
        +++S LN+P  FEGA+FKRWK+KMLF LTLKKVATACTTEKPK+SE  PT  Q+++  TWT++DFICKNLILNGLTDELYDYYSTM+ AK+VW+ALQKKY
Subjt:  MLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKY

Query:  DVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL
        D +EAGSKKY VS+YLRYQMTDDRSVEAQSHE+
Subjt:  DVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL

KAA0058200.1 uncharacterized protein E6C27_scaffold274G005210 [Cucumis melo var. makuwa]5.2e-5373.76Show/hide
Query:  MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEV
        M G IQSD+++  LN+P  FEGA+FKRWK+KMLF LTLKKVATACTTEKP++ E  PT  Q+++  TWT++DFICKNLILNGLTDELYDYYSTM+ AKEV
Subjt:  MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEV

Query:  WDALQKKYDVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL
        WDALQKKYD +EA SKKY +S+YLRYQMTDD+SVEAQSHE+
Subjt:  WDALQKKYDVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL

KAA0060458.1 uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa]2.1e-5475.89Show/hide
Query:  MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEV
        M G IQSD+++S LN+   FEGA+FKRWK+K+LF LTLKKVATACTTEKPK+SE  PT  Q+++  TWT++DFICKNLILNGLTDELYDYYSTM+ AKEV
Subjt:  MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEV

Query:  WDALQKKYDVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL
        WDALQKKYD +EAGSKKY VS+YLRYQMTDD+SVEAQSHE+
Subjt:  WDALQKKYDVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL

KAA0065374.1 uncharacterized protein E6C27_scaffold17G00360 [Cucumis melo var. makuwa]1.2e-5274.47Show/hide
Query:  MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEV
        M G IQSD+++S LN+P  FEGA+FKRWK+KMLF LTLKKVATACTTEK K+SE  P   Q+++  TWT++DFICKNLILNGLTDELYDYYSTM+  KEV
Subjt:  MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEV

Query:  WDALQKKYDVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL
        WDALQKKYD KEA SKKY VS+YLRYQMTDD+SVE QSHE+
Subjt:  WDALQKKYDVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL

TYJ98000.1 hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa]2.2e-5175.94Show/hide
Query:  MLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKY
        +++S LN+P  FEGA+FKRWK+KMLF LTLKKVATACT EKPK+SE  PT  Q+++  TWT++DFICKNLILNGLTDELYDYYSTM+ AK+VW+ALQKKY
Subjt:  MLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKY

Query:  DVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL
        D +EAGSKKY VS+YLRYQMTDDRSVEAQSHE+
Subjt:  DVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL

TrEMBL top hitse value%identityAlignment
A0A5A7UA92 Uncharacterized protein2.1e-5276.69Show/hide
Query:  MLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKY
        +++S LN+P  FEGA+FKRWK+KMLF LTLKKVATACTTEKPK+SE  PT  Q+++  TWT++DFICKNLILNGLTDELYDYYSTM+ AK+VW+ALQKKY
Subjt:  MLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKY

Query:  DVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL
        D +EAGSKKY VS+YLRYQMTDDRSVEAQSHE+
Subjt:  DVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL

A0A5A7USR3 Uncharacterized protein2.5e-5373.76Show/hide
Query:  MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEV
        M G IQSD+++  LN+P  FEGA+FKRWK+KMLF LTLKKVATACTTEKP++ E  PT  Q+++  TWT++DFICKNLILNGLTDELYDYYSTM+ AKEV
Subjt:  MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEV

Query:  WDALQKKYDVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL
        WDALQKKYD +EA SKKY +S+YLRYQMTDD+SVEAQSHE+
Subjt:  WDALQKKYDVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL

A0A5A7UYY4 Uncharacterized protein1.0e-5475.89Show/hide
Query:  MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEV
        M G IQSD+++S LN+   FEGA+FKRWK+K+LF LTLKKVATACTTEKPK+SE  PT  Q+++  TWT++DFICKNLILNGLTDELYDYYSTM+ AKEV
Subjt:  MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEV

Query:  WDALQKKYDVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL
        WDALQKKYD +EAGSKKY VS+YLRYQMTDD+SVEAQSHE+
Subjt:  WDALQKKYDVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL

A0A5D3BDS3 Uncharacterized protein1.1e-5175.94Show/hide
Query:  MLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKY
        +++S LN+P  FEGA+FKRWK+KMLF LTLKKVATACT EKPK+SE  PT  Q+++  TWT++DFICKNLILNGLTDELYDYYSTM+ AK+VW+ALQKKY
Subjt:  MLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKY

Query:  DVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL
        D +EAGSKKY VS+YLRYQMTDDRSVEAQSHE+
Subjt:  DVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL

A0A5D3DC59 Reverse transcriptase Ty1/copia-type domain-containing protein5.6e-5374.47Show/hide
Query:  MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEV
        M G IQSD+++S LN+P  FEGA+FKRWK+KMLF LTLKKVATACTTEK K+SE  P   Q+++  TWT++DFICKNLILNGLTDELYDYYSTM+  KEV
Subjt:  MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEV

Query:  WDALQKKYDVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL
        WDALQKKYD KEA SKKY VS+YLRYQMTDD+SVE QSHE+
Subjt:  WDALQKKYDVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGGTCCAATCCAAAGCGATATGCTGACCTCATATCTCAACCAACCATTATGTTTCGAAGGAGCTAATTTCAAGCGTTGGAAACGAAAAATGTTATTTTTATTAAC
TTTGAAGAAGGTTGCCACTGCATGCACTACCGAAAAGCCAAAGATTTCAGAAACTTATCCAACAAATGTGCAAATCCAAAGTCACAACACCTGGACAAAGTCTGACTTCA
TTTGTAAGAATTTAATACTCAATGGACTTACTGACGAGCTTTATGACTACTACAGTACCATGTCCATCGCAAAAGAAGTTTGGGATGCGTTGCAAAAGAAGTATGACGTC
AAAGAAGCTGGATCCAAGAAGTATATGGTAAGTCAGTATTTGCGGTACCAGATGACTGACGACAGATCAGTGGAGGCCCAATCACACGAGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGGTCCAATCCAAAGCGATATGCTGACCTCATATCTCAACCAACCATTATGTTTCGAAGGAGCTAATTTCAAGCGTTGGAAACGAAAAATGTTATTTTTATTAAC
TTTGAAGAAGGTTGCCACTGCATGCACTACCGAAAAGCCAAAGATTTCAGAAACTTATCCAACAAATGTGCAAATCCAAAGTCACAACACCTGGACAAAGTCTGACTTCA
TTTGTAAGAATTTAATACTCAATGGACTTACTGACGAGCTTTATGACTACTACAGTACCATGTCCATCGCAAAAGAAGTTTGGGATGCGTTGCAAAAGAAGTATGACGTC
AAAGAAGCTGGATCCAAGAAGTATATGGTAAGTCAGTATTTGCGGTACCAGATGACTGACGACAGATCAGTGGAGGCCCAATCACACGAGTTGTAG
Protein sequenceShow/hide protein sequence
MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKYDV
KEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL