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PI0003294 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003294
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptiontranscription factor TCP10-like
Genome locationchr12:5441503..5442120
RNA-Seq ExpressionPI0003294
SyntenyPI0003294
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:2000032 - regulation of secondary shoot formation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR005333 - Transcription factor, TCP
IPR017887 - Transcription factor TCP subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583970.1 Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2281.33Show/hide
Query:  RRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATED
        RRL SSA    G+GKVYTSKG RAR+LRLSAPTAI+FYD+QDRLG  RPTEAIDWLLQNAKSAID LSRPL TED
Subjt:  RRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATED

XP_008443015.1 PREDICTED: transcription factor TCP10-like [Cucumis melo]6.9e-7689.47Show/hide
Query:  MGSLDDQDKNTAKIGRRNRRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQS
        MGSLDD DK  AKIGRRNRRLCSSAGA  GAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAK AIDALSRPL TEDNDCRKQ 
Subjt:  MGSLDDQDKNTAKIGRRNRRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQS

Query:  FSFPVPSSSSSSSPSSQFQSYPIQNFSQKGNLSAFSPMILNATTAEFSGTQPPCLSQSNVGAGFPFFPMWE
        FS PVPSSSS    SSQFQSYP+QNFSQKGNLS FSPMILN TTA FSGTQPPC SQSNVGAGFPFFPMWE
Subjt:  FSFPVPSSSSSSSPSSQFQSYPIQNFSQKGNLSAFSPMILNATTAEFSGTQPPCLSQSNVGAGFPFFPMWE

XP_011653401.1 transcription factor PCF8 [Cucumis sativus]3.1e-7687.36Show/hide
Query:  MGSLDDQDKNTAKIGRRNRRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQS
        MGSL D DKNT KI RRNRRL S+A AG+G GKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLL NAKSAIDALSRPL TEDNDCRKQS
Subjt:  MGSLDDQDKNTAKIGRRNRRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQS

Query:  FSFPVP---SSSSSSSPSSQFQSYPIQNFSQKGNLSAFSPMILNATTAEFSGTQPPCLSQSNVGAGFPFFPMWE
        FS PVP   SSSSSSS SSQFQSYP+QNFSQKGNLS F PMILNATT EFSGTQPPC SQSN+GAGFPFFPMWE
Subjt:  FSFPVP---SSSSSSSPSSQFQSYPIQNFSQKGNLSAFSPMILNATTAEFSGTQPPCLSQSNVGAGFPFFPMWE

XP_023001760.1 transcription factor PCF8-like [Cucurbita maxima]3.6e-4871.9Show/hide
Query:  RRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQSFSFPVPSSSSSSSPSSQF
        RRL SSA    G+GKVYTSKGLRARRLRLSAPTAI+FYD+QDRLG  RPTEAIDWLLQNAKSAIDALSRPL TED      S +  VPSSSS    SSQF
Subjt:  RRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQSFSFPVPSSSSSSSPSSQF

Query:  QSYPIQNFSQKGNLSAFSPMILNATTAEFSGTQPPCLSQSNVGAGFPFFPMWE
         +YP++NF + GNLS  SPMI+N T AEFSG QPPCLSQSN  +G P FPMWE
Subjt:  QSYPIQNFSQKGNLSAFSPMILNATTAEFSGTQPPCLSQSNVGAGFPFFPMWE

XP_038893685.1 transcription factor TCP10-like [Benincasa hispida]2.3e-5572.19Show/hide
Query:  SLDDQDKNTAKIGRRNRRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQSFS
        SL+D+D+ TAK+GRR+RRL SSAGA    GKVYTS+GLRARR RLSAPTAI+FYD+QDRLG  RPTE +DWLL+NAKSAIDALSRPL T D + RKQ F 
Subjt:  SLDDQDKNTAKIGRRNRRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQSFS

Query:  FPVPSSSSSSSPSSQFQSYPIQNFSQKGNLSAFSPMILNATTAEFSGTQPPCLSQSNVGAGFPFFPMWE
         PVPSSS     SSQFQSYP++NFSQKGNL+ FSPMILNAT  EFSG QPP  SQSNV  GF  FP+WE
Subjt:  FPVPSSSSSSSPSSQFQSYPIQNFSQKGNLSAFSPMILNATTAEFSGTQPPCLSQSNVGAGFPFFPMWE

TrEMBL top hitse value%identityAlignment
A0A0A0LUP1 TCP domain-containing protein1.5e-7687.36Show/hide
Query:  MGSLDDQDKNTAKIGRRNRRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQS
        MGSL D DKNT KI RRNRRL S+A AG+G GKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLL NAKSAIDALSRPL TEDNDCRKQS
Subjt:  MGSLDDQDKNTAKIGRRNRRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQS

Query:  FSFPVP---SSSSSSSPSSQFQSYPIQNFSQKGNLSAFSPMILNATTAEFSGTQPPCLSQSNVGAGFPFFPMWE
        FS PVP   SSSSSSS SSQFQSYP+QNFSQKGNLS F PMILNATT EFSGTQPPC SQSN+GAGFPFFPMWE
Subjt:  FSFPVP---SSSSSSSPSSQFQSYPIQNFSQKGNLSAFSPMILNATTAEFSGTQPPCLSQSNVGAGFPFFPMWE

A0A1E5V1L9 Transcription factor PCF76.2e-1439.07Show/hide
Query:  SSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDAL----SRPLATEDNDCRK-------QSFSFPVPSSSSS
        S+AG      KV T++GLR RR+RL+A TAI+FYD+QDRLG  RP++A+DWL++NAKSAID L      P ATE  D  +        S+ F  P  + S
Subjt:  SSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDAL----SRPLATEDNDCRK-------QSFSFPVPSSSSS

Query:  SSPSSQFQSYPIQNFSQKGNLSAFSPMILNATTA----EFSGTQPPCLSQS
              F  + +      GN+ +  P    A+T     E+ G+ P  LS++
Subjt:  SSPSSQFQSYPIQNFSQKGNLSAFSPMILNATTA----EFSGTQPPCLSQS

A0A1S3B7T4 transcription factor TCP10-like3.3e-7689.47Show/hide
Query:  MGSLDDQDKNTAKIGRRNRRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQS
        MGSLDD DK  AKIGRRNRRLCSSAGA  GAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAK AIDALSRPL TEDNDCRKQ 
Subjt:  MGSLDDQDKNTAKIGRRNRRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQS

Query:  FSFPVPSSSSSSSPSSQFQSYPIQNFSQKGNLSAFSPMILNATTAEFSGTQPPCLSQSNVGAGFPFFPMWE
        FS PVPSSSS    SSQFQSYP+QNFSQKGNLS FSPMILN TTA FSGTQPPC SQSNVGAGFPFFPMWE
Subjt:  FSFPVPSSSSSSSPSSQFQSYPIQNFSQKGNLSAFSPMILNATTAEFSGTQPPCLSQSNVGAGFPFFPMWE

A0A5A7UTZ9 Transcription factor TCP10-like3.3e-7689.47Show/hide
Query:  MGSLDDQDKNTAKIGRRNRRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQS
        MGSLDD DK  AKIGRRNRRLCSSAGA  GAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAK AIDALSRPL TEDNDCRKQ 
Subjt:  MGSLDDQDKNTAKIGRRNRRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQS

Query:  FSFPVPSSSSSSSPSSQFQSYPIQNFSQKGNLSAFSPMILNATTAEFSGTQPPCLSQSNVGAGFPFFPMWE
        FS PVPSSSS    SSQFQSYP+QNFSQKGNLS FSPMILN TTA FSGTQPPC SQSNVGAGFPFFPMWE
Subjt:  FSFPVPSSSSSSSPSSQFQSYPIQNFSQKGNLSAFSPMILNATTAEFSGTQPPCLSQSNVGAGFPFFPMWE

A0A6J1KM30 transcription factor PCF8-like1.7e-4871.9Show/hide
Query:  RRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQSFSFPVPSSSSSSSPSSQF
        RRL SSA    G+GKVYTSKGLRARRLRLSAPTAI+FYD+QDRLG  RPTEAIDWLLQNAKSAIDALSRPL TED      S +  VPSSSS    SSQF
Subjt:  RRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQSFSFPVPSSSSSSSPSSQF

Query:  QSYPIQNFSQKGNLSAFSPMILNATTAEFSGTQPPCLSQSNVGAGFPFFPMWE
         +YP++NF + GNLS  SPMI+N T AEFSG QPPCLSQSN  +G P FPMWE
Subjt:  QSYPIQNFSQKGNLSAFSPMILNATTAEFSGTQPPCLSQSNVGAGFPFFPMWE

SwissProt top hitse value%identityAlignment
A2WV68 Transcription factor PCF71.5e-1243.88Show/hide
Query:  SSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQSFSFPVPSSSSSSSPSSQFQS
        S+AG      KV T++GLR RR+RL+A TAI+FYD+QDRLG  RP++A+DWL++NAK+AID L             ++ + P P+++S+  P    Q+
Subjt:  SSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQSFSFPVPSSSSSSSPSSQFQS

A2ZMR9 Transcription factor PCF83.5e-1447.12Show/hide
Query:  TAKIGRRNRRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQSFSFPVPSSSS
        TA   R +R   ++AG      KV TS+GLR RR+RLS PTAI FYD+QDRLG  +P++AI+WL++ A +AIDAL         DC     SF +P+++S
Subjt:  TAKIGRRNRRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQSFSFPVPSSSS

Query:  SSSP
        S  P
Subjt:  SSSP

Q2QM59 Transcription factor PCF83.5e-1447.12Show/hide
Query:  TAKIGRRNRRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQSFSFPVPSSSS
        TA   R +R   ++AG      KV TS+GLR RR+RLS PTAI FYD+QDRLG  +P++AI+WL++ A +AIDAL         DC     SF +P+++S
Subjt:  TAKIGRRNRRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQSFSFPVPSSSS

Query:  SSSP
        S  P
Subjt:  SSSP

Q8LT05 Transcription factor PCF71.1e-1243.88Show/hide
Query:  SSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQSFSFPVPSSSSSSSPSSQFQS
        S+AG      KV T++GLR RR+RL+A TAI+FYD+QDRLG  RP++A+DWL++NAK+AID L             ++ + P P+++S+  P +  Q+
Subjt:  SSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQSFSFPVPSSSSSSSPSSQFQS

Q9MAH8 Transcription factor TCP36.0e-1460.94Show/hide
Query:  SAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSR
        S G      KV T+KG R RR+RLSAPTAI+FYD+QDRLG  RP++A+DWL+  AKSAID L++
Subjt:  SAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSR

Arabidopsis top hitse value%identityAlignment
AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 34.2e-1560.94Show/hide
Query:  SAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSR
        S G      KV T+KG R RR+RLSAPTAI+FYD+QDRLG  RP++A+DWL+  AKSAID L++
Subjt:  SAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSR

AT2G31070.1 TCP domain protein 101.8e-1349.43Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQSFSFPVPSSSSSSSPSSQFQ
        KV+TSKG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL++ AK+AID L   L        +Q      P ++   SP+  FQ
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQSFSFPVPSSSSSSSPSSQFQ

AT3G15030.1 TCP family transcription factor 41.4e-1357.14Show/hide
Query:  SAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALS
        S G      KV T+KG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL++ AK++ID L+
Subjt:  SAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALS

AT3G15030.2 TCP family transcription factor 41.4e-1357.14Show/hide
Query:  SAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALS
        S G      KV T+KG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL++ AK++ID L+
Subjt:  SAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALS

AT3G15030.3 TCP family transcription factor 41.4e-1357.14Show/hide
Query:  SAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALS
        S G      KV T+KG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL++ AK++ID L+
Subjt:  SAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTCTTGATGATCAGGATAAGAATACGGCGAAGATTGGCCGGAGAAACCGTCGACTCTGTTCGAGTGCCGGTGCCGGTTCCGGTGCTGGCAAGGTTTATACTTC
AAAAGGTCTCCGAGCAAGGCGGCTTCGGCTGTCGGCTCCCACCGCCATTAAATTCTACGATCTTCAAGATCGCCTTGGATGTGGCCGACCAACTGAAGCCATCGATTGGC
TTCTTCAGAATGCGAAATCCGCCATTGATGCCCTCTCTCGACCTTTAGCAACAGAGGACAACGATTGTAGAAAACAGAGTTTCAGTTTCCCTGTTCCTTCGTCTTCTTCT
TCTTCTTCTCCTTCTTCACAGTTCCAGTCTTACCCAATTCAAAATTTCTCCCAAAAAGGCAACCTCTCTGCTTTCAGTCCAATGATTTTGAATGCCACGACGGCAGAATT
TTCCGGTACCCAACCACCGTGTCTAAGTCAGAGCAATGTCGGAGCTGGTTTTCCTTTCTTCCCGATGTGGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTCTTGATGATCAGGATAAGAATACGGCGAAGATTGGCCGGAGAAACCGTCGACTCTGTTCGAGTGCCGGTGCCGGTTCCGGTGCTGGCAAGGTTTATACTTC
AAAAGGTCTCCGAGCAAGGCGGCTTCGGCTGTCGGCTCCCACCGCCATTAAATTCTACGATCTTCAAGATCGCCTTGGATGTGGCCGACCAACTGAAGCCATCGATTGGC
TTCTTCAGAATGCGAAATCCGCCATTGATGCCCTCTCTCGACCTTTAGCAACAGAGGACAACGATTGTAGAAAACAGAGTTTCAGTTTCCCTGTTCCTTCGTCTTCTTCT
TCTTCTTCTCCTTCTTCACAGTTCCAGTCTTACCCAATTCAAAATTTCTCCCAAAAAGGCAACCTCTCTGCTTTCAGTCCAATGATTTTGAATGCCACGACGGCAGAATT
TTCCGGTACCCAACCACCGTGTCTAAGTCAGAGCAATGTCGGAGCTGGTTTTCCTTTCTTCCCGATGTGGGAATAG
Protein sequenceShow/hide protein sequence
MGSLDDQDKNTAKIGRRNRRLCSSAGAGSGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKSAIDALSRPLATEDNDCRKQSFSFPVPSSSS
SSSPSSQFQSYPIQNFSQKGNLSAFSPMILNATTAEFSGTQPPCLSQSNVGAGFPFFPMWE