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PI0003345 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003345
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr09:11255313..11257215
RNA-Seq ExpressionPI0003345
SyntenyPI0003345
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042324.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa]3.3e-4270.9Show/hide
Query:  MAENFQTFSSGTLNANSSSSCDNSVKEQVNLLTKLFASFVKGEVPKVISCGVCGLLGHYNDQCQEVKEVSVMGGFRRNNSQSNTYNPSWRDHPNLRWGTQ
        MAEN +  SS TL++N+SSS DNSV+EQVNLLTKLFASFVKG+VPKV+SCGV GLLGH+NDQ  E+KE+S M GFRRN+S SNTYN  WRDHPNLRWG Q
Subjt:  MAENFQTFSSGTLNANSSSSCDNSVKEQVNLLTKLFASFVKGEVPKVISCGVCGLLGHYNDQCQEVKEVSVMGGFRRNNSQSNTYNPSWRDHPNLRWGTQ

Query:  EPKPTNTSSSSSSSQALISNIFKTDFEKNLAKLS
        EPKPTNTSSSSSSSQ L+S     +F+ N+   S
Subjt:  EPKPTNTSSSSSSSQALISNIFKTDFEKNLAKLS

KAA0066473.1 hypothetical protein E6C27_scaffold25G00080 [Cucumis melo var. makuwa]5.8e-3973.81Show/hide
Query:  MGGFRRNNSQSNTYNPSWRDHPNLRWGTQEPKPTNTSSSSSSSQ-----------ALISNIFKTDFEKNLAKLSEHTVSSTGVIKNDMEIMKASTSELGD
        MGGFRRN+SQSNTYN  WR+HPNL WG+QEPKPTNTSSSSSSS            AL SN  K DFEKNL KLSE TV+ST  +KND+EIMKAS SELGD
Subjt:  MGGFRRNNSQSNTYNPSWRDHPNLRWGTQEPKPTNTSSSSSSSQ-----------ALISNIFKTDFEKNLAKLSEHTVSSTGVIKNDMEIMKASTSELGD

Query:  KLNQLATHVLKTEEKDKLPAQPNHAN
        KLNQLATHV+K EEKDKL AQPNHAN
Subjt:  KLNQLATHVLKTEEKDKLPAQPNHAN

KAE8647060.1 hypothetical protein Csa_022980 [Cucumis sativus]1.9e-6671.21Show/hide
Query:  MAENFQTF-SSGTLNANSSSSCDNSVKEQVNLLTKLFASFVKGEVPKVISCGVCGLLGHYNDQCQEVKEVSVMGGFRRNNSQSNTYNPSWRDHPNLRWGT
        MA+N Q F +S TL+ NSS SCDNSVKEQVNLLTK+F SFVKGEVPKV+SCGVCGLLGH+NDQC E+KEVS +GG+RRN+SQSN YN  WRD P+LRWG 
Subjt:  MAENFQTF-SSGTLNANSSSSCDNSVKEQVNLLTKLFASFVKGEVPKVISCGVCGLLGHYNDQCQEVKEVSVMGGFRRNNSQSNTYNPSWRDHPNLRWGT

Query:  QEPKPTNTSSSSS----------SSQALISNIFKTDFEKNLAKLSEHTVSSTGVIKNDMEIMKASTSELGDKLNQLATHVLKTEEKDKLPAQPNHANV
        QEPK  NT S+SS          S  A  SN FK+DFEKNLAKLSE+TVSSTG IKND+E MKAS SELG+KL+QLA   LKTE K KLPAQPNHANV
Subjt:  QEPKPTNTSSSSS----------SSQALISNIFKTDFEKNLAKLSEHTVSSTGVIKNDMEIMKASTSELGDKLNQLATHVLKTEEKDKLPAQPNHANV

TYK02152.1 hypothetical protein E5676_scaffold388G00420 [Cucumis melo var. makuwa]8.1e-3368.03Show/hide
Query:  EVKEVSVMGGFRRNNSQSNTYNPSWRDHPNLRWGTQEPKPTNTSSSSSSSQALISNIFKTDFEKNLAKLSEHTVSSTGVIKNDMEIMKASTSELGDKLNQ
        E+K VS MGG +RN+SQ+NTYN  WRDHP L W  QEPKPTNTSS SSSS                AKLSEHTV+STG +KND+EIMKAS  ELGDKLNQ
Subjt:  EVKEVSVMGGFRRNNSQSNTYNPSWRDHPNLRWGTQEPKPTNTSSSSSSSQALISNIFKTDFEKNLAKLSEHTVSSTGVIKNDMEIMKASTSELGDKLNQ

Query:  LATHVLKTEEKDKLPAQPNHAN
        LAT VLKTE KDKLP QPNHAN
Subjt:  LATHVLKTEEKDKLPAQPNHAN

TYK27330.1 hypothetical protein E5676_scaffold394G00160 [Cucumis melo var. makuwa]5.8e-3973.81Show/hide
Query:  MGGFRRNNSQSNTYNPSWRDHPNLRWGTQEPKPTNTSSSSSSSQ-----------ALISNIFKTDFEKNLAKLSEHTVSSTGVIKNDMEIMKASTSELGD
        MGGFRRN+SQSNTYN  WR+HPNL WG+QEPKPTNTSSSSSSS            AL SN  K DFEKNL KLSE TV+ST  +KND+EIMKAS SELGD
Subjt:  MGGFRRNNSQSNTYNPSWRDHPNLRWGTQEPKPTNTSSSSSSSQ-----------ALISNIFKTDFEKNLAKLSEHTVSSTGVIKNDMEIMKASTSELGD

Query:  KLNQLATHVLKTEEKDKLPAQPNHAN
        KLNQLATHV+K EEKDKL AQPNHAN
Subjt:  KLNQLATHVLKTEEKDKLPAQPNHAN

TrEMBL top hitse value%identityAlignment
A0A0A0KEQ8 Uncharacterized protein3.9e-6570.62Show/hide
Query:  NSSSSCDNSVKEQVNLLTKLFASFVKGEVPKVISCGVCGLLGHYNDQCQEVKEVSVMGGFRRNNSQSNTYNPSWRDHPNLRWGTQEPKPTNTSSSSS---
        NSS SCDNSVKEQVNLLTK+F SFVKGEVPKV+SCGVCGLLGH+NDQC E+KEVS +GG+RRN+SQSN YN  WRD P+LRWG QEPK  NT S+SS   
Subjt:  NSSSSCDNSVKEQVNLLTKLFASFVKGEVPKVISCGVCGLLGHYNDQCQEVKEVSVMGGFRRNNSQSNTYNPSWRDHPNLRWGTQEPKPTNTSSSSS---

Query:  -------SSQALISNIFKTDFEKNLAKLSEHTVSSTGVIKNDMEIMKASTSELGDKLNQLATHVLKTEEKDKLPAQPNHANV-------RKWDR
               S  A  SN FK+DFEKNLAKLSE+TVSSTG IKND+E MKAS SELG+KL+QLA   LKTE K KLPAQPNHANV        KWDR
Subjt:  -------SSQALISNIFKTDFEKNLAKLSEHTVSSTGVIKNDMEIMKASTSELGDKLNQLATHVLKTEEKDKLPAQPNHANV-------RKWDR

A0A5A7VEJ8 Uncharacterized protein2.8e-3973.81Show/hide
Query:  MGGFRRNNSQSNTYNPSWRDHPNLRWGTQEPKPTNTSSSSSSSQ-----------ALISNIFKTDFEKNLAKLSEHTVSSTGVIKNDMEIMKASTSELGD
        MGGFRRN+SQSNTYN  WR+HPNL WG+QEPKPTNTSSSSSSS            AL SN  K DFEKNL KLSE TV+ST  +KND+EIMKAS SELGD
Subjt:  MGGFRRNNSQSNTYNPSWRDHPNLRWGTQEPKPTNTSSSSSSSQ-----------ALISNIFKTDFEKNLAKLSEHTVSSTGVIKNDMEIMKASTSELGD

Query:  KLNQLATHVLKTEEKDKLPAQPNHAN
        KLNQLATHV+K EEKDKL AQPNHAN
Subjt:  KLNQLATHVLKTEEKDKLPAQPNHAN

A0A5D3BTM3 Uncharacterized protein3.9e-3368.03Show/hide
Query:  EVKEVSVMGGFRRNNSQSNTYNPSWRDHPNLRWGTQEPKPTNTSSSSSSSQALISNIFKTDFEKNLAKLSEHTVSSTGVIKNDMEIMKASTSELGDKLNQ
        E+K VS MGG +RN+SQ+NTYN  WRDHP L W  QEPKPTNTSS SSSS                AKLSEHTV+STG +KND+EIMKAS  ELGDKLNQ
Subjt:  EVKEVSVMGGFRRNNSQSNTYNPSWRDHPNLRWGTQEPKPTNTSSSSSSSQALISNIFKTDFEKNLAKLSEHTVSSTGVIKNDMEIMKASTSELGDKLNQ

Query:  LATHVLKTEEKDKLPAQPNHAN
        LAT VLKTE KDKLP QPNHAN
Subjt:  LATHVLKTEEKDKLPAQPNHAN

A0A5D3CW21 Retrovirus-related Pol polyprotein from transposon 297 family1.6e-4270.9Show/hide
Query:  MAENFQTFSSGTLNANSSSSCDNSVKEQVNLLTKLFASFVKGEVPKVISCGVCGLLGHYNDQCQEVKEVSVMGGFRRNNSQSNTYNPSWRDHPNLRWGTQ
        MAEN +  SS TL++N+SSS DNSV+EQVNLLTKLFASFVKG+VPKV+SCGV GLLGH+NDQ  E+KE+S M GFRRN+S SNTYN  WRDHPNLRWG Q
Subjt:  MAENFQTFSSGTLNANSSSSCDNSVKEQVNLLTKLFASFVKGEVPKVISCGVCGLLGHYNDQCQEVKEVSVMGGFRRNNSQSNTYNPSWRDHPNLRWGTQ

Query:  EPKPTNTSSSSSSSQALISNIFKTDFEKNLAKLS
        EPKPTNTSSSSSSSQ L+S     +F+ N+   S
Subjt:  EPKPTNTSSSSSSSQALISNIFKTDFEKNLAKLS

A0A5D3DVM3 Uncharacterized protein2.8e-3973.81Show/hide
Query:  MGGFRRNNSQSNTYNPSWRDHPNLRWGTQEPKPTNTSSSSSSSQ-----------ALISNIFKTDFEKNLAKLSEHTVSSTGVIKNDMEIMKASTSELGD
        MGGFRRN+SQSNTYN  WR+HPNL WG+QEPKPTNTSSSSSSS            AL SN  K DFEKNL KLSE TV+ST  +KND+EIMKAS SELGD
Subjt:  MGGFRRNNSQSNTYNPSWRDHPNLRWGTQEPKPTNTSSSSSSSQ-----------ALISNIFKTDFEKNLAKLSEHTVSSTGVIKNDMEIMKASTSELGD

Query:  KLNQLATHVLKTEEKDKLPAQPNHAN
        KLNQLATHV+K EEKDKL AQPNHAN
Subjt:  KLNQLATHVLKTEEKDKLPAQPNHAN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAAAATTTCCAAACTTTTTCTAGTGGAACACTTAATGCTAATTCTTCTTCATCTTGTGATAATTCTGTCAAAGAACAAGTGAATTTACTAACTAAACTTTTTGC
TTCTTTTGTGAAGGGGGAGGTTCCTAAAGTCATCTCTTGTGGAGTTTGTGGCCTACTTGGACACTACAATGATCAATGCCAAGAAGTTAAAGAGGTAAGTGTCATGGGAG
GTTTTAGAAGAAATAATTCACAGAGTAACACCTACAACCCTAGTTGGAGAGATCATCCAAATCTTAGGTGGGGAACTCAAGAACCAAAACCTACCAATACTTCTTCTTCA
TCATCATCATCACAAGCTCTTATCTCAAATATTTTTAAAACTGATTTTGAAAAGAACTTAGCTAAGTTGAGTGAACATACTGTTAGTTCAACTGGAGTCATAAAAAATGA
TATGGAAATCATGAAAGCATCCACTTCTGAGTTAGGAGATAAGCTTAATCAATTAGCAACACACGTTCTTAAAACGGAAGAGAAAGACAAACTTCCCGCCCAACCCAACC
ATGCTAATGTAAGAAAATGGGATAGAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGAAAATTTCCAAACTTTTTCTAGTGGAACACTTAATGCTAATTCTTCTTCATCTTGTGATAATTCTGTCAAAGAACAAGTGAATTTACTAACTAAACTTTTTGC
TTCTTTTGTGAAGGGGGAGGTTCCTAAAGTCATCTCTTGTGGAGTTTGTGGCCTACTTGGACACTACAATGATCAATGCCAAGAAGTTAAAGAGGTAAGTGTCATGGGAG
GTTTTAGAAGAAATAATTCACAGAGTAACACCTACAACCCTAGTTGGAGAGATCATCCAAATCTTAGGTGGGGAACTCAAGAACCAAAACCTACCAATACTTCTTCTTCA
TCATCATCATCACAAGCTCTTATCTCAAATATTTTTAAAACTGATTTTGAAAAGAACTTAGCTAAGTTGAGTGAACATACTGTTAGTTCAACTGGAGTCATAAAAAATGA
TATGGAAATCATGAAAGCATCCACTTCTGAGTTAGGAGATAAGCTTAATCAATTAGCAACACACGTTCTTAAAACGGAAGAGAAAGACAAACTTCCCGCCCAACCCAACC
ATGCTAATGTAAGAAAATGGGATAGAGCTTAA
Protein sequenceShow/hide protein sequence
MAENFQTFSSGTLNANSSSSCDNSVKEQVNLLTKLFASFVKGEVPKVISCGVCGLLGHYNDQCQEVKEVSVMGGFRRNNSQSNTYNPSWRDHPNLRWGTQEPKPTNTSSS
SSSSQALISNIFKTDFEKNLAKLSEHTVSSTGVIKNDMEIMKASTSELGDKLNQLATHVLKTEEKDKLPAQPNHANVRKWDRA