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PI0003355 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003355
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTRASH domain-containing protein
Genome locationchr04:4850860..4853520
RNA-Seq ExpressionPI0003355
SyntenyPI0003355
Gene Ontology termsGO:0005840 - ribosome (cellular component)
InterPro domainsIPR000988 - Ribosomal protein L24e-related
IPR038630 - Ribosomal protein L24e/L24 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651076.1 hypothetical protein Csa_002111 [Cucumis sativus]3.3e-1552.78Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAY-RRLHGKDV------------------------------------TQNAWKESNGARRGSEGGSFPHPSKDQSQG
        FCRSK HKNFKMKRNPRKVKWTKAY      KDV                                    T +AWKES GARRGSEGGSFPHPSKDQSQG
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAY-RRLHGKDV------------------------------------TQNAWKESNGARRGSEGGSFPHPSKDQSQG

Query:  GTITSRAK
        GT   ++K
Subjt:  GTITSRAK

KAF4384801.1 hypothetical protein G4B88_000197, partial [Cannabis sativa]3.8e-1170.91Show/hide
Query:  FAMMRGFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE
        F ++  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKD+TQ+A  E    R   E
Subjt:  FAMMRGFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE

KAG8378011.1 hypothetical protein BUALT_Bualt08G0093700 [Buddleja alternifolia]5.0e-1177.55Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE
        FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKD+TQ+A  E    R   E
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE

XP_010931634.1 probable ribosome biogenesis protein RLP24 [Elaeis guineensis]2.9e-1191.89Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNA
        FCRSKCHKNFKMKRNPRKVKWTK+YRRLHGKD+TQN+
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNA

XP_011005535.1 PREDICTED: probable ribosome biogenesis protein RLP24 [Populus euphratica]5.0e-1177.55Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE
        FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKD+TQ+A  E    R   E
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE

TrEMBL top hitse value%identityAlignment
A0A0A0LDW1 Uncharacterized protein7.8e-1854.46Show/hide
Query:  MMRGFCRSKCHKNFKMKRNPRKVKWTKAY-RRLHGKDV------------------------------------TQNAWKESNGARRGSEGGSFPHPSKD
        MMRGFCRSK HKNFKMKRNPRKVKWTKAY      KDV                                    T +AWKES GARRGSEGGSFPHPSKD
Subjt:  MMRGFCRSKCHKNFKMKRNPRKVKWTKAY-RRLHGKDV------------------------------------TQNAWKESNGARRGSEGGSFPHPSKD

Query:  QSQGGTITSRAK
        QSQGGT   ++K
Subjt:  QSQGGTITSRAK

A0A251TQ48 Putative ribosome biogenesis protein RLP242.9e-1275.47Show/hide
Query:  MMRGFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE
        MM+ FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKD+TQ+A  E    R   E
Subjt:  MMRGFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE

A0A6I9RSA6 probable ribosome biogenesis protein RLP241.4e-1191.89Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNA
        FCRSKCHKNFKMKRNPRKVKWTK+YRRLHGKD+TQN+
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNA

A0A7J6GPN3 TRASH domain-containing protein (Fragment)1.8e-1170.91Show/hide
Query:  FAMMRGFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE
        F ++  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKD+TQ+A  E    R   E
Subjt:  FAMMRGFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE

A0A7N1A588 Uncharacterized protein1.8e-1171.67Show/hide
Query:  MVFSLFAMMRGFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE
        M FSLFAMM    RSKCHKNFKMKRNPRKVKWTKAYRRLHGKD+TQ++  E    R   E
Subjt:  MVFSLFAMMRGFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE

SwissProt top hitse value%identityAlignment
O22165 Probable ribosome biogenesis protein RLP243.0e-1167.35Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE
        FCRSKCHKNFKMKRNPRKVKWTKA+R  HGKD+T++   E    R   E
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE

Q10353 Ribosome biogenesis protein rlp248.8e-1167.39Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARR
        FCRSKCHKNFKMKRNPRKV WTKAYR+ HGK++  +       ARR
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARR

Q3SZ12 Probable ribosome biogenesis protein RLP241.1e-0873.53Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVT
        FC+SKCHKNFK KRNPRKV+WTKA+R+  GK++T
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVT

Q6CF69 Ribosome biogenesis protein RLP248.3e-0975.76Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDV
        FCRSKCHKNFKMKRNPRK++WTKA+R+  GK++
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDV

Q86B05 Probable ribosome biogenesis protein RLP247.5e-1076.47Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVT
        FCRSKCHKNFK+KRNPRK +WTKA+R+L+GK++T
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVT

Arabidopsis top hitse value%identityAlignment
AT2G44860.1 Ribosomal protein L24e family protein2.2e-1267.35Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE
        FCRSKCHKNFKMKRNPRKVKWTKA+R  HGKD+T++   E    R   E
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE

AT2G44860.2 Ribosomal protein L24e family protein2.2e-1267.35Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE
        FCRSKCHKNFKMKRNPRKVKWTKA+R  HGKD+T++   E    R   E
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATTCAGTTTGTTCGCAATGATGCGAGGATTTTGTCGGTCAAAATGCCACAAGAACTTTAAGATGAAGAGGAATCCGCGTAAAGTAAAATGGACCAAGGCATATAG
GAGGTTGCATGGAAAGGATGTGACACAGAATGCATGGAAAGAAAGCAACGGGGCTCGAAGAGGATCGGAAGGAGGATCGTTCCCTCACCCTTCCAAAGATCAAAGTCAAG
GTGGTACCATCACAAGCAGAGCAAAATCAGCCTATGGAAGAATGAGTTTGTTACTTCTCTTATCTCACTATTTCAAATACTTACATCGTAATTACTTTTATCACATATCT
TGA
mRNA sequenceShow/hide mRNA sequence
CGTTCGTAGTCATCACTGGAGAGGGGTAAAAAAGAATCAAGAAACGAGAAACCAAGAATAGTTGCTTAAAATTTTGGGTTGCTCCAAAAAATATCGTTTACCCGACCCAA
TCAAACCAGAAAATTTAGGCTTGTATTATTTCAAAAGAAGAATAAGGTTAGAAGTGTTGGTTTTGTTCGTCCACTATATATTCAGGACATGGTATTCAGTTTGTTCGCAA
TGATGCGAGGATTTTGTCGGTCAAAATGCCACAAGAACTTTAAGATGAAGAGGAATCCGCGTAAAGTAAAATGGACCAAGGCATATAGGAGGTTGCATGGAAAGGATGTG
ACACAGAATGCATGGAAAGAAAGCAACGGGGCTCGAAGAGGATCGGAAGGAGGATCGTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGTGGTACCATCACAAGCAGAGC
AAAATCAGCCTATGGAAGAATGAGTTTGTTACTTCTCTTATCTCACTATTTCAAATACTTACATCGTAATTACTTTTATCACATATCTTGAACTGCCACATTTCTTGCAC
AGCGGTAGATTGCCATTGTCTGTCCTTACACACGCATGGTTCTTCTGTAGAAGTTCATTTTGAGAACGCTTAATCATCATTTTTGTTCTCAATTTGAACTTTCTTATTAG
AAAGCATGGAATGAGTTTTGCTGTCCTCTCTCTTTCTTCCTCCCTTCGTAGCTTCATCTCAAGCTTTCGAAGAGTTTTTTCAATGTTCTGTTCTCCGAGTTTTGCAGTTT
TTATTATTTAGCTGGCTGCCCTTTGGTTCCTGTTTTTTATTTTGTTTCAAATCCACATTTACAGTTAGAAATTGATAGGAGGATGGGTTGGGACTTGAAATTTCAAGTTC
TAGTAATTGCTCTAAATAAGCTACTAGTTAGGTGGTATGTCTCGTGTAAGTTGGTCCGGACACTCACGAATGTATACTATGGATGAATATGTAAGTTGGTCCGGACACTC
ACGAATGTATACTATGGATGAATATG
Protein sequenceShow/hide protein sequence
MVFSLFAMMRGFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDVTQNAWKESNGARRGSEGGSFPHPSKDQSQGGTITSRAKSAYGRMSLLLLLSHYFKYLHRNYFYHIS