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PI0003371 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003371
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr10:694728..695318
RNA-Seq ExpressionPI0003371
SyntenyPI0003371
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]3.6e-5261.11Show/hide
Query:  SHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKQGGR
        SHP AKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL+MSPDD+M  R+ R+SE R  SSGSKRK+ G 
Subjt:  SHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKQGGR

Query:  ALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK
        A +  +I+R+AIEY N+QL  IAEWP  QRQDA+ TR E+VR L+ I EL+ +DR R MRILMRNVD+MKAFL++ D +K
Subjt:  ALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK

KAA0046928.1 retrotransposon protein [Cucumis melo var. makuwa]2.7e-5259.26Show/hide
Query:  SVTTTTLVQSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSS
        S+   +L   HP AKGLLNK F HYD+L YVFG+DRATGGRAE F D+GSN PPGF+ FA     D + P   S GL+MSPDD+M  R+ R+SE R  SS
Subjt:  SVTTTTLVQSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSS

Query:  GSKRKQGGRALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK
        GSKRK+ G A +  +I+R+AIEY N+QL  IAEWP  QRQDA+ TR E+VR L+ I EL+ +DR R MRILMRNVD+MKAFL++ D +K
Subjt:  GSKRKQGGRALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-5260.44Show/hide
Query:  VQSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKQG
        V+SHP AKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN P G++ FA  D +D +   M S GL+MSPDD+M  R+ R+SE R  SSGSKRK+ 
Subjt:  VQSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKQG

Query:  GRALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK
        G A +  +I+R+A+EY N+QL  IAEWP  QRQDA+ TR E+VRQL+ I EL+ +DR R MRI+MRNVD+MKAFL++ D +K
Subjt:  GRALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK

KAA0048362.1 retrotransposon protein [Cucumis melo var. makuwa]3.6e-5261.11Show/hide
Query:  SHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKQGGR
        SHP AKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL+MSPDD+M  R+ R+SE R  SSGSKRK+ G 
Subjt:  SHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKQGGR

Query:  ALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK
        A +  +I+R+AIEY N+QL  IAEWP  QRQDA+ TR E+VR L+ I EL+ +DR R MRILMRNVD+MKAFL++ D +K
Subjt:  ALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK

KAA0065737.1 retrotransposon protein [Cucumis melo var. makuwa]2.7e-5261.11Show/hide
Query:  SHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKQGGR
        SHP AKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++ FA     D + P M S GL+MSPDD+M  R+ R+SE R  SS SKRK+ G 
Subjt:  SHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKQGGR

Query:  ALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK
        A +  +I+R+AIEY N+QL  IAEWP  QRQDA+ TR ++VRQL+ I EL+ +DR R MRILMRNVD+MKAFL++ D +K
Subjt:  ALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein1.7e-5261.11Show/hide
Query:  SHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKQGGR
        SHP AKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++ FA     D +   M S GL+MSPDD+M  R+ R+SE R  SSGSKRK+ G 
Subjt:  SHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKQGGR

Query:  ALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK
        A +  +I+R+AIEY N+QL  IAEWP  QRQDA+ TR E+V+QL+ I EL+ +DR R MRILMRNVD+MKAFL++ D +K
Subjt:  ALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK

A0A5A7TVM3 Retrotransposon protein1.3e-5259.26Show/hide
Query:  SVTTTTLVQSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSS
        S+   +L   HP AKGLLNK F HYD+L YVFG+DRATGGRAE F D+GSN PPGF+ FA     D + P   S GL+MSPDD+M  R+ R+SE R  SS
Subjt:  SVTTTTLVQSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSS

Query:  GSKRKQGGRALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK
        GSKRK+ G A +  +I+R+AIEY N+QL  IAEWP  QRQDA+ TR E+VR L+ I EL+ +DR R MRILMRNVD+MKAFL++ D +K
Subjt:  GSKRKQGGRALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK

A0A5A7TYQ6 Retrotransposon protein5.9e-5360.44Show/hide
Query:  VQSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKQG
        V+SHP AKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN P G++ FA  D +D +   M S GL+MSPDD+M  R+ R+SE R  SSGSKRK+ 
Subjt:  VQSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKQG

Query:  GRALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK
        G A +  +I+R+A+EY N+QL  IAEWP  QRQDA+ TR E+VRQL+ I EL+ +DR R MRI+MRNVD+MKAFL++ D +K
Subjt:  GRALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK

A0A5A7VF53 Retrotransposon protein1.3e-5261.11Show/hide
Query:  SHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKQGGR
        SHP AKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++ FA     D + P M S GL+MSPDD+M  R+ R+SE R  SS SKRK+ G 
Subjt:  SHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKQGGR

Query:  ALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK
        A +  +I+R+AIEY N+QL  IAEWP  QRQDA+ TR ++VRQL+ I EL+ +DR R MRILMRNVD+MKAFL++ D +K
Subjt:  ALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK

A0A5D3DPR5 Retrotransposon protein1.7e-5261.11Show/hide
Query:  SHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKQGGR
        SHP AKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL+MSPDD+M  R+ R+SE R  SSGSKRK+ G 
Subjt:  SHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKQGGR

Query:  ALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK
        A +  +I+R+AIEY N+QL  IAEWP  QRQDA+ TR E+VR L+ I EL+ +DR R MRILMRNVD+MKAFL++ D +K
Subjt:  ALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGGTTTTCCTTCAGTTACCACAACAACACTTGTACAGAGTCATCCAACCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCACTACGACGACCTCTGCTACGTGTT
CGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCGGCGATGTTGGGTCGAACATGCCTCCAGGCTTCGAAGGATTTGCCCACTACGACGGGAACGATATGGAGA
ACCCGACGATGTGCAGTCAGGGCCTGGACATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTGAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAA
CAAGGAGGGCGGGCATTGGAAGAAGCTGAAATTATTCGTAGTGCCATAGAATATGCCAATGACCAACTTAAGGCCATTGCAGAATGGCCCAAGGAACAACGGCAAGATGC
AAGTGTGACACGTGCGGAAGTCGTTAGACAGCTACAGGGAATCTCGGAGCTGAGTCGACTAGATAGGGCTCGTTGTATGCGCATATTGATGCGCAACGTGGACAACATGA
AAGCATTTTTAGACATCCTGGACGAGGTTAAGTTGGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCGGTTTTCCTTCAGTTACCACAACAACACTTGTACAGAGTCATCCAACCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCACTACGACGACCTCTGCTACGTGTT
CGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCGGCGATGTTGGGTCGAACATGCCTCCAGGCTTCGAAGGATTTGCCCACTACGACGGGAACGATATGGAGA
ACCCGACGATGTGCAGTCAGGGCCTGGACATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTGAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAA
CAAGGAGGGCGGGCATTGGAAGAAGCTGAAATTATTCGTAGTGCCATAGAATATGCCAATGACCAACTTAAGGCCATTGCAGAATGGCCCAAGGAACAACGGCAAGATGC
AAGTGTGACACGTGCGGAAGTCGTTAGACAGCTACAGGGAATCTCGGAGCTGAGTCGACTAGATAGGGCTCGTTGTATGCGCATATTGATGCGCAACGTGGACAACATGA
AAGCATTTTTAGACATCCTGGACGAGGTTAAGTTGGATTAG
Protein sequenceShow/hide protein sequence
MFGFPSVTTTTLVQSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRK
QGGRALEEAEIIRSAIEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGISELSRLDRARCMRILMRNVDNMKAFLDILDEVKLD