; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0003393 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003393
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptiontranscription factor TCP5
Genome locationchr12:806059..806597
RNA-Seq ExpressionPI0003393
SyntenyPI0003393
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR005333 - Transcription factor, TCP
IPR017887 - Transcription factor TCP subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584403.1 Transcription factor TCP5, partial [Cucurbita argyrosperma subsp. sororia]2.0e-5362.18Show/hide
Query:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------
        MISKLK+EG H EAKQMEGKRKK    SRQG FLRGNPRIFRVSP FGGKDRHSKVCT+KGLRDRRIRLS PTAIQLYDLQN+LGLSQP+          
Subjt:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------

Query:  -------PTTPFPKEFDPNASILHHSDFGDAALKAKNEETEQRLLVQI---------------TDDINGDCSHFEPPSFPFPFMDQTNSAPFS
               P   FPK+FDPNAS LHH D  DAA KAK+EET   LL ++               T+ +  +C HF+PPSFPFP MDQ N A FS
Subjt:  -------PTTPFPKEFDPNASILHHSDFGDAALKAKNEETEQRLLVQI---------------TDDINGDCSHFEPPSFPFPFMDQTNSAPFS

KAG7019990.1 Transcription factor TCP5, partial [Cucurbita argyrosperma subsp. argyrosperma]5.9e-5361.66Show/hide
Query:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------
        MISKLK+EG H EAKQMEGKRKK    SRQG FLRGNPRIFRVSP FGGKDRHSKVCT+KGLRDRRIRLS PTAIQLYDLQN+LGLS+P+          
Subjt:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------

Query:  -------PTTPFPKEFDPNASILHHSDFGDAALKAKNEETEQRLLVQI---------------TDDINGDCSHFEPPSFPFPFMDQTNSAPFS
               P   FPK+FDPNAS LHH D  DAA KAK+EET   LL ++               T+ +  +C HF+PPSFPFP MDQ N A FS
Subjt:  -------PTTPFPKEFDPNASILHHSDFGDAALKAKNEETEQRLLVQI---------------TDDINGDCSHFEPPSFPFPFMDQTNSAPFS

XP_008445912.1 PREDICTED: transcription factor TCP5 [Cucumis melo]3.7e-7181.22Show/hide
Query:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------
        MISKLKE+GAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCT+KGLRDRRIRLSIPTAIQLYDLQNKLGLSQP+          
Subjt:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------

Query:  -------PTTPFPKEFDPNASILHHSDF-GDAAL-KAKNEETEQRLLVQITDDINGDCSHFEPPSFPFPFMDQTNSAPFSF
               P   FPK+FDPNASILHHSD  GDAAL KAKNEET+Q LLVQ T+DINGD SHFEPPSFPFPFM QTNS+PFSF
Subjt:  -------PTTPFPKEFDPNASILHHSDF-GDAAL-KAKNEETEQRLLVQITDDINGDCSHFEPPSFPFPFMDQTNSAPFSF

XP_011660343.1 transcription factor TCP5 [Cucumis sativus]3.4e-7280.56Show/hide
Query:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------
        MISKLKEEGAHDEAKQ +GK KKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCT+KGLRDRRIRLSIPTAIQLYDLQNKLGLSQP+          
Subjt:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------

Query:  -------PTTPFPKEFDPNASILHHSDFGDAALKAKNEETEQRLLVQITDDINGDCSHFEPPSFPFPFM-DQTNSAPFSF
               P  PFPK+FDPNASILHHSD GDAA KAKNEET+  LLVQ T+DING CSHFEPP+FPFPFM DQTNSAPFSF
Subjt:  -------PTTPFPKEFDPNASILHHSDFGDAALKAKNEETEQRLLVQITDDINGDCSHFEPPSFPFPFM-DQTNSAPFSF

XP_038895251.1 transcription factor PCF6 [Benincasa hispida]3.5e-5361.81Show/hide
Query:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------
        MISKL +EG HDEAKQMEGKRKKA        FLRGNPRI RVS  FGGKDRHSKVCTVKGLRDRRIRLS+PTAIQLYDLQNKLGLSQP+          
Subjt:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------

Query:  -------PTTPFPKEFDPNASILHHS----------DFGDAALKAKNEETEQRLLVQ----------ITDDINGDCSHFEPPSFPFPFMDQTNSAPFSF
               P   FPK+FDPNASILHHS          D  DAA+ AKNEET+QRLL+            T+ I  +C HF+PPSFPFP MDQT+ A FSF
Subjt:  -------PTTPFPKEFDPNASILHHS----------DFGDAALKAKNEETEQRLLVQ----------ITDDINGDCSHFEPPSFPFPFMDQTNSAPFSF

TrEMBL top hitse value%identityAlignment
A0A0A0LTI3 TCP domain-containing protein1.6e-7280.56Show/hide
Query:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------
        MISKLKEEGAHDEAKQ +GK KKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCT+KGLRDRRIRLSIPTAIQLYDLQNKLGLSQP+          
Subjt:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------

Query:  -------PTTPFPKEFDPNASILHHSDFGDAALKAKNEETEQRLLVQITDDINGDCSHFEPPSFPFPFM-DQTNSAPFSF
               P  PFPK+FDPNASILHHSD GDAA KAKNEET+  LLVQ T+DING CSHFEPP+FPFPFM DQTNSAPFSF
Subjt:  -------PTTPFPKEFDPNASILHHSDFGDAALKAKNEETEQRLLVQITDDINGDCSHFEPPSFPFPFM-DQTNSAPFSF

A0A1S3BEN2 transcription factor TCP51.8e-7181.22Show/hide
Query:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------
        MISKLKE+GAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCT+KGLRDRRIRLSIPTAIQLYDLQNKLGLSQP+          
Subjt:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------

Query:  -------PTTPFPKEFDPNASILHHSDF-GDAAL-KAKNEETEQRLLVQITDDINGDCSHFEPPSFPFPFMDQTNSAPFSF
               P   FPK+FDPNASILHHSD  GDAAL KAKNEET+Q LLVQ T+DINGD SHFEPPSFPFPFM QTNS+PFSF
Subjt:  -------PTTPFPKEFDPNASILHHSDF-GDAAL-KAKNEETEQRLLVQITDDINGDCSHFEPPSFPFPFMDQTNSAPFSF

A0A5D3BIQ9 Transcription factor TCP51.8e-7181.22Show/hide
Query:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------
        MISKLKE+GAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCT+KGLRDRRIRLSIPTAIQLYDLQNKLGLSQP+          
Subjt:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------

Query:  -------PTTPFPKEFDPNASILHHSDF-GDAAL-KAKNEETEQRLLVQITDDINGDCSHFEPPSFPFPFMDQTNSAPFSF
               P   FPK+FDPNASILHHSD  GDAAL KAKNEET+Q LLVQ T+DINGD SHFEPPSFPFPFM QTNS+PFSF
Subjt:  -------PTTPFPKEFDPNASILHHSDF-GDAAL-KAKNEETEQRLLVQITDDINGDCSHFEPPSFPFPFMDQTNSAPFSF

A0A6J1E7C6 transcription factor PCF8-like7.8e-5161.14Show/hide
Query:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------
        MIS+LK EG H EAKQMEGKRKK    SRQG FLRGNPRIFRVSP FGGKDRHSKVCT+KGLRDRRIRLS PTAIQLYDLQN+LGLSQP+          
Subjt:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------

Query:  -------PTTPFPKEFDPNASILHHSDFGDAALKAKNEETEQRLLVQI---------------TDDINGDCSHFEPPSFPFPFMDQTNSAPFS
               P   FPK+FDPNAS L H D  DAA KAK+EET   LL ++               T+ +  +C HF+PPSFPFP MDQ N A FS
Subjt:  -------PTTPFPKEFDPNASILHHSDFGDAALKAKNEETEQRLLVQI---------------TDDINGDCSHFEPPSFPFPFMDQTNSAPFS

A0A6J1KPD9 transcription factor TCP13-like2.9e-5362.69Show/hide
Query:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------
        MISKLK+EG H EAKQMEGKRKK    SRQG FLRGNPRIFRVSP FGGKDRHSKVCT+KGLRDRRIRLS PTAIQLYDLQN+LGLSQP+          
Subjt:  MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT----------

Query:  -------PTTPFPKEFDPNASILHHSDFGDAALKAKNEETEQRLL--------------VQI-TDDINGDCSHFEPPSFPFPFMDQTNSAPFS
               P   FPK+FDPNAS LHH D  DAA KAK+EET   LL              +Q+ T+ +  +C HF+PPSFPFP MDQ N A FS
Subjt:  -------PTTPFPKEFDPNASILHHSDFGDAALKAKNEETEQRLL--------------VQI-TDDINGDCSHFEPPSFPFPFMDQTNSAPFS

SwissProt top hitse value%identityAlignment
A2XMN1 Transcription factor PCF62.8e-1344.12Show/hide
Query:  RIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQP-----------TPTTPFPKEFDPNA-SILHHSDFGDAALKAKNEETEQR
        RI+RV    GGKDRHSKV T KG+RDRR+RLS+ TAIQ YDLQ++LG  QP           +P        DP A + + H+   DAA   +  + +Q+
Subjt:  RIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQP-----------TPTTPFPKEFDPNA-SILHHSDFGDAALKAKNEETEQR

Query:  LL
         L
Subjt:  LL

Q9C758 Transcription factor TCP242.1e-1354.32Show/hide
Query:  KQMEGKRKKARTCSRQGQFLRGN-----PRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT
        K  E + +K +  S     L  N      RI RVS   GGKDRHSKV T KGLRDRRIRLS+ TAIQ YDLQ++LG  QP+
Subjt:  KQMEGKRKKARTCSRQGQFLRGN-----PRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT

Q9FME3 Transcription factor TCP55.3e-2066.22Show/hide
Query:  MEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT
        ++ ++  + + SRQ      NPRI RVS  FGGKDRHSKVCTV+GLRDRRIRLS+PTAIQLYDLQ++LGLSQP+
Subjt:  MEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT

Q9LEZ9 Transcription factor TCP171.7e-1881.48Show/hide
Query:  NPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT
        NPRI RVS  FGGKDRHSKVCTV+GLRDRRIRLS+ TAIQ+YDLQ +LGLSQP+
Subjt:  NPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT

Q9S7W5 Transcription factor TCP131.4e-1751.09Show/hide
Query:  KLKEEGAHDEAKQMEG----KRKKARTCSRQGQFLRG-NPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT
        ++KE+    E +   G    K++     S    +++  +PRI RVS  FGGKDRHSKVCT++GLRDRR+RLS+PTAIQLYDLQ +LG+ QP+
Subjt:  KLKEEGAHDEAKQMEG----KRKKARTCSRQGQFLRG-NPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT

Arabidopsis top hitse value%identityAlignment
AT1G30210.1 TEOSINTE BRANCHED 1, cycloidea, and PCF family 241.5e-1454.32Show/hide
Query:  KQMEGKRKKARTCSRQGQFLRGN-----PRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT
        K  E + +K +  S     L  N      RI RVS   GGKDRHSKV T KGLRDRRIRLS+ TAIQ YDLQ++LG  QP+
Subjt:  KQMEGKRKKARTCSRQGQFLRGN-----PRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT

AT3G02150.1 plastid transcription factor 11.0e-1851.09Show/hide
Query:  KLKEEGAHDEAKQMEG----KRKKARTCSRQGQFLRG-NPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT
        ++KE+    E +   G    K++     S    +++  +PRI RVS  FGGKDRHSKVCT++GLRDRR+RLS+PTAIQLYDLQ +LG+ QP+
Subjt:  KLKEEGAHDEAKQMEG----KRKKARTCSRQGQFLRG-NPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT

AT3G02150.2 plastid transcription factor 11.0e-1851.09Show/hide
Query:  KLKEEGAHDEAKQMEG----KRKKARTCSRQGQFLRG-NPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT
        ++KE+    E +   G    K++     S    +++  +PRI RVS  FGGKDRHSKVCT++GLRDRR+RLS+PTAIQLYDLQ +LG+ QP+
Subjt:  KLKEEGAHDEAKQMEG----KRKKARTCSRQGQFLRG-NPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT

AT5G08070.1 TCP domain protein 171.2e-1981.48Show/hide
Query:  NPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT
        NPRI RVS  FGGKDRHSKVCTV+GLRDRRIRLS+ TAIQ+YDLQ +LGLSQP+
Subjt:  NPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT

AT5G60970.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 53.7e-2166.22Show/hide
Query:  MEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT
        ++ ++  + + SRQ      NPRI RVS  FGGKDRHSKVCTV+GLRDRRIRLS+PTAIQLYDLQ++LGLSQP+
Subjt:  MEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTCAAAATTAAAGGAAGAGGGGGCTCATGATGAAGCAAAACAAATGGAGGGGAAAAGGAAGAAAGCAAGAACATGTTCAAGACAAGGGCAATTTCTAAGAGGCAA
TCCAAGAATATTTAGGGTTTCACCATTTTTTGGAGGTAAAGATAGGCACAGCAAAGTTTGTACAGTAAAAGGGTTAAGAGATAGAAGGATTAGGCTTTCAATTCCAACAG
CAATTCAACTTTATGATTTGCAAAACAAACTTGGTTTAAGCCAACCCACTCCCACCACTCCATTTCCAAAAGAATTTGACCCAAATGCTTCAATTCTTCATCATTCTGAT
TTTGGAGATGCTGCTTTGAAGGCCAAAAATGAAGAAACTGAGCAGAGACTTTTGGTTCAAATTACCGATGACATTAATGGAGACTGTTCCCATTTTGAACCTCCAAGCTT
TCCATTCCCATTCATGGATCAGACTAATTCAGCTCCATTTTCCTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCTCAAAATTAAAGGAAGAGGGGGCTCATGATGAAGCAAAACAAATGGAGGGGAAAAGGAAGAAAGCAAGAACATGTTCAAGACAAGGGCAATTTCTAAGAGGCAA
TCCAAGAATATTTAGGGTTTCACCATTTTTTGGAGGTAAAGATAGGCACAGCAAAGTTTGTACAGTAAAAGGGTTAAGAGATAGAAGGATTAGGCTTTCAATTCCAACAG
CAATTCAACTTTATGATTTGCAAAACAAACTTGGTTTAAGCCAACCCACTCCCACCACTCCATTTCCAAAAGAATTTGACCCAAATGCTTCAATTCTTCATCATTCTGAT
TTTGGAGATGCTGCTTTGAAGGCCAAAAATGAAGAAACTGAGCAGAGACTTTTGGTTCAAATTACCGATGACATTAATGGAGACTGTTCCCATTTTGAACCTCCAAGCTT
TCCATTCCCATTCATGGATCAGACTAATTCAGCTCCATTTTCCTTCTAA
Protein sequenceShow/hide protein sequence
MISKLKEEGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTVKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPTPTTPFPKEFDPNASILHHSD
FGDAALKAKNEETEQRLLVQITDDINGDCSHFEPPSFPFPFMDQTNSAPFSF