; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0003396 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003396
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr05:15582809..15582973
RNA-Seq ExpressionPI0003396
SyntenyPI0003396
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033880.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.4e-1477.36Show/hide
Query:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRN
        MTN DI +DIDE DST+ TTAGDDIHYIET NEW+QW+DELA+ MFSDW+LRN
Subjt:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRN

KAA0053146.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]8.1e-1577.78Show/hide
Query:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRNQ
        MTN DI +DIDE DST+ TTAGDDI+YIET+NEW+QWKDELAE MFSDW+L NQ
Subjt:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRNQ

KAA0054126.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.8e-1475.93Show/hide
Query:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRNQ
        MTN DI ++IDE DST+ TTA DDIHYIETSNEWSQW+D+LAE MF+DW+LRNQ
Subjt:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRNQ

KAA0067470.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-1475.93Show/hide
Query:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRNQ
        MTN DI ++IDE DST+ TT  DDIHYIETSNEWSQW+D+LAE MFSDW+LRNQ
Subjt:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRNQ

TYJ99699.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.4e-1475.93Show/hide
Query:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRNQ
        MTN DI ++IDE DST+ TT  DDIHYIETSNEWSQW+D+LAE MFSDW+LRNQ
Subjt:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRNQ

TrEMBL top hitse value%identityAlignment
A0A5A7UFY9 Putative nuclease HARBI13.9e-1577.78Show/hide
Query:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRNQ
        MTN DI +DIDE DST+ TTAGDDI+YIET+NEW+QWKDELAE MFSDW+L NQ
Subjt:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRNQ

A0A5A7UIM7 Putative nuclease HARBI18.8e-1575.93Show/hide
Query:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRNQ
        MTN DI ++IDE DST+ TTA DDIHYIETSNEWSQW+D+LAE MF+DW+LRNQ
Subjt:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRNQ

A0A5A7VJX3 Retrotransposon protein1.1e-1475.93Show/hide
Query:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRNQ
        MTN DI ++IDE DST+ TT  DDIHYIETSNEWSQW+D+LAE MFSDW+LRNQ
Subjt:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRNQ

A0A5D3BL48 Putative nuclease HARBI11.1e-1475.93Show/hide
Query:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRNQ
        MTN DI ++IDE DST+ TT  DDIHYIETSNEWSQW+D+LAE MFSDW+LRNQ
Subjt:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRNQ

A0A5D3BQ11 Putative nuclease HARBI11.1e-1477.36Show/hide
Query:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRN
        MTN DI +DIDE DST+ TTAGDDIHYIET NEW+QW+DELA+ MFSDW+LRN
Subjt:  MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAACACTGACATATCGAATGACATAGATGAGGGTGATTCGACATACACGACCACTGCAGGTGACGATATTCATTACATAGAGACCTCGAATGAATGGAGTCAATG
GAAGGATGAGCTTGCCGAAAGAATGTTCAGTGATTGGAAGTTGCGTAATCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAAACACTGACATATCGAATGACATAGATGAGGGTGATTCGACATACACGACCACTGCAGGTGACGATATTCATTACATAGAGACCTCGAATGAATGGAGTCAATG
GAAGGATGAGCTTGCCGAAAGAATGTTCAGTGATTGGAAGTTGCGTAATCAGTAA
Protein sequenceShow/hide protein sequence
MTNTDISNDIDEGDSTYTTTAGDDIHYIETSNEWSQWKDELAERMFSDWKLRNQ