CuGenDBv2

Gene ID	PI0003441
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	50S ribosomal protein L23, chloroplastic
Genome location	chr01:21175008..21175289
RNA-Seq Expression	PI0003441
Synteny	PI0003441
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001014 - Ribosomal protein L23/L25, conserved site IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR013025 - Ribosomal protein L25/L23

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QHE64999.1 ribosomal protein L23 [Coffea benghalensis var. bababudanii]

7.9e-42

93.55

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT
        MDGIKYAVFTDKSIRLLGK+QYT NVESRSTRTEI HWV+LFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP YSIP LRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

YP_003359400.1 ribosomal protein L23 [Olea europaea]

1.0e-41

93.55

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT
        MDGIKYAVFTDKSIRLLGK+QYTSNVES STRTEI HWV+LFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP YSIP LRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

YP_009366298.1 ribosomal protein L23 [Aloysia citrodora]

1.0e-41

92.47

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT
        MDGIKYAVFTDKSIRLLGKSQYTSNVES STRTE+ HWV+LFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMI+TLQP YSIP LRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

YP_009570485.1 ribosomal protein L23 [Berberidopsis corallina]

1.3e-41

92.47

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT
        MDGIKYAVFTDKSIRLLGK+QYTSNVES STRTEI HW++LFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP YSIP LRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

YP_010028455.1 ribosomal protein L23 [Ventilago leiocarpa]

7.9e-42

93.55

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT
        MDGIKYAVFTDKSIRLLGK+QYTSNVES STRTEI HWV+LFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP YSIP LRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

TrEMBL top hits

e value

%identity

Alignment

A0A2L0VCX1 50S ribosomal protein L23

5.0e-42

93.55

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT
        MDGIKYAVFTDKSIRLLGK+QYTSNVES STRTEI HWV+LFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP YSIP LRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

A0A4D5Y878 50S ribosomal protein L23, chloroplastic

5.0e-42

93.55

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT
        MDGIKYAVFTDKSIRLLGK+QYTSNVES STRTEI HWV+LFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP YSIP LRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

A0A6B9QEG0 50S ribosomal protein L23, chloroplastic

3.8e-42

93.55

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT
        MDGIKYAVFTDKSIRLLGK+QYT NVESRSTRTEI HWV+LFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP YSIP LRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

A0A7M1YAK5 50S ribosomal protein L23, chloroplastic

3.8e-42

93.55

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT
        MDGIKYAVFTDKSIRLLGK+QYTSNVES STRTEI HWV+LFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP YSIP LRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

F5C018 50S ribosomal protein L23, chloroplastic

5.0e-42

93.55

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT
        MDGIKYAVFTDKSIRLLGK+QYTSNVES STRTEI HWV+LFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP YSIP LRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

SwissProt top hits

e value

%identity

Alignment

Q06R67 50S ribosomal protein L23, chloroplastic

3.9e-44

92.47

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT
        MDGIKYAVFT+KSIRLLGK+QYTSNVES STRTEI HWV+LFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP YSIP LRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

Q09FP7 50S ribosomal protein L23, chloroplastic

5.1e-44

92.47

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT
        MDGIKYAVFTDKSIRLLG +QYTSNVES STRTEI HWV+LFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP YSIP LRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

Q0PUX7 50S ribosomal protein L23, chloroplastic

5.1e-44

92.47

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT
        MDGIKYAVFTDKSIRLLGK+QYTSNVES STRTEI HWV+LFFGVKVIAMNSHRLPGKGRRMGP MGHTMHYRRMIITLQP YSIP LRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

Q0ZIV5 50S ribosomal protein L23, chloroplastic

1.3e-44

93.55

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT
        MDGIKYAVFTDKSIRLLGK+QYTSNVES STRTEI HWV+LFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP YSIP LRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

Q4VZK6 50S ribosomal protein L23, chloroplastic

1.3e-44

93.55

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT
        MDGIKYAVFTDKSIRLLGK+QYTSNVES STRTEI HWV+LFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP YSIP LRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00840.1 ribosomal protein L23.1

2.6e-43

89.25

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT
        MDGIKYAVFTDKSIRLLGK+QYT NVES STRTEI HWV+LFFGVKVIAMNSHRLPGK +RMGPI+GHTMHYRRMIITLQP YSIP LRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

ATCG01300.1 ribosomal protein L23

2.6e-43

89.25

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT
        MDGIKYAVFTDKSIRLLGK+QYT NVES STRTEI HWV+LFFGVKVIAMNSHRLPGK +RMGPI+GHTMHYRRMIITLQP YSIP LRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAGTCAATATACTTCTAATGTCGAATCAAGATCAACTAGGACAGAAATAATGCA
TTGGGTCAAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGAC
GTATGATCATTACGCTTCAACCGGATTATTCTATTCCATCTCTTAGAAAGAAAAGAACTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDGIKYAVFTDKSIRLLGKSQYTSNVESRSTRTEIMHWVKLFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPDYSIPSLRKKRT

PI0003441 (gene) of Melon (PI 482460) v1 genome