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PI0003461 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003461
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr07:12326024..12327482
RNA-Seq ExpressionPI0003461
SyntenyPI0003461
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]5.5e-6369.02Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPNDK P ++E+ N++RK+DP+ NTYN+GWRDNPNLRW NDNQ+ +QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLETSTLPSSSKGTR
         EMKQQM+ LT AISK++GKGKLPAQPD+ANVSAISLRSGK L+TP++ E+KVTS  + L +K+E KEEK+ET+  PS+SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLETSTLPSSSKGTR

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.7e-6267.93Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGLVGHPNDK P ++E+ N++RK+DPH NTYN+GWRDNPNLRW NDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLETSTLPSSSKGTR
         EMKQQM+ LT AISK++GKGKL AQ ++ANVSA+SLRSGK L+TP++ E+K TS P+ L  K+E KEEK+ET+  P +SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLETSTLPSSSKGTR

KAA0065554.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-6267.93Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGLVGHPNDK+P ++E+ N++R++DPH NTYN+GWRDNP LRW NDNQ+  QA S+S+NQGTNLED++KALA NT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLETSTLPSSSKGTR
         EMKQQM+ LT AISK++GKGKLPAQP+HANVSAISLRSGK L+TP++ E+KVTS  + L +K+E KEE +ET+  PS+ K  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLETSTLPSSSKGTR

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.5e-6469.95Show/hide
Query:  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQN
        TTLLTSFVQG  +KV KCGVCGLVGH N+K P ++E+ N++R++DPHSNTYN+GWRDNPNLRW NDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ 
Subjt:  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQN

Query:  EMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLETSTLPSSSKGTR
        EMKQQM+ LT AISK++GKGKLPAQ DHANVSAISLRSGK L+TP++ E+KVTS P+ L +K+E KEEK+ET+  PS+SK  +
Subjt:  EMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLETSTLPSSSKGTR

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.7e-6271.1Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGLVGHPNDK P ++E+ N++R++DPHSNTYN+GWRDN NLRW NDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLET
         +MKQQM+ LT AISK++GKGKLPAQPDHANVSAISLRSGK L+TP++ E+K+TS P+ L +K+E KEEK+++
Subjt:  NEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLET

TrEMBL top hitse value%identityAlignment
A0A5A7VE49 Retrotransposon gag protein7.8e-6367.93Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGLVGHPNDK+P ++E+ N++R++DPH NTYN+GWRDNP LRW NDNQ+  QA S+S+NQGTNLED++KALA NT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLETSTLPSSSKGTR
         EMKQQM+ LT AISK++GKGKLPAQP+HANVSAISLRSGK L+TP++ E+KVTS  + L +K+E KEE +ET+  PS+ K  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLETSTLPSSSKGTR

A0A5A7VQ60 Retrotransposon gag protein4.1e-6469.95Show/hide
Query:  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQN
        TTLLTSFVQG  +KV KCGVCGLVGH N+K P ++E+ N++R++DPHSNTYN+GWRDNPNLRW NDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ 
Subjt:  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQN

Query:  EMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLETSTLPSSSKGTR
        EMKQQM+ LT AISK++GKGKLPAQ DHANVSAISLRSGK L+TP++ E+KVTS P+ L +K+E KEEK+ET+  PS+SK  +
Subjt:  EMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLETSTLPSSSKGTR

A0A5D3CB46 Retrotransposon gag protein2.3e-6271.1Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGLVGHPNDK P ++E+ N++R++DPHSNTYN+GWRDN NLRW NDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLET
         +MKQQM+ LT AISK++GKGKLPAQPDHANVSAISLRSGK L+TP++ E+K+TS P+ L +K+E KEEK+++
Subjt:  NEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLET

A0A5D3CRR8 Retrotransposon gag protein1.3e-6267.93Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGLVGHPNDK P ++E+ N++RK+DPH NTYN+GWRDNPNLRW NDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLETSTLPSSSKGTR
         EMKQQM+ LT AISK++GKGKL AQ ++ANVSA+SLRSGK L+TP++ E+K TS P+ L  K+E KEEK+ET+  P +SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLETSTLPSSSKGTR

E5GBZ4 Retrotransposon gag protein2.7e-6369.02Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPNDK P ++E+ N++RK+DP+ NTYN+GWRDNPNLRW NDNQ+ +QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLETSTLPSSSKGTR
         EMKQQM+ LT AISK++GKGKLPAQPD+ANVSAISLRSGK L+TP++ E+KVTS  + L +K+E KEEK+ET+  PS+SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVTSTPVLLENKDEKKEEKLETSTLPSSSKGTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGTGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTTCCCTAACTTAGTGGA
AGAGGCAAATGTCATTAGGAAGCACGATCCTCATAGCAATACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGAGAAACGACAACCAAAGACCCTCGCAAG
CAACCTCCTCTTCAAACAATCAAGGTACGAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACCATCTCTTTTCAGAATGAAATGAAGCAACAAATGTCTCATCTT
ACAAATGCCATAAGCAAATTAGAAGGTAAAGGCAAACTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCGCTTAGAAGTGGTAAGACTCTGGAAACCCCTTC
AAGTGAAGAAAAGGTAACTTCTACCCCTGTTCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAGTTAGAAACTAGCACTTTACCATCATCTTCTAAAGGAACAAGGG
ATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGTGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTTCCCTAACTTAGTGGA
AGAGGCAAATGTCATTAGGAAGCACGATCCTCATAGCAATACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGAGAAACGACAACCAAAGACCCTCGCAAG
CAACCTCCTCTTCAAACAATCAAGGTACGAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACCATCTCTTTTCAGAATGAAATGAAGCAACAAATGTCTCATCTT
ACAAATGCCATAAGCAAATTAGAAGGTAAAGGCAAACTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCGCTTAGAAGTGGTAAGACTCTGGAAACCCCTTC
AAGTGAAGAAAAGGTAACTTCTACCCCTGTTCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAGTTAGAAACTAGCACTTTACCATCATCTTCTAAAGGAACAAGGG
ATTGA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKFPNLVEEANVIRKHDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHL
TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKVTSTPVLLENKDEKKEEKLETSTLPSSSKGTRD