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PI0003472 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003472
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol
Genome locationchr10:11858763..11859606
RNA-Seq ExpressionPI0003472
SyntenyPI0003472
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043584.1 hypothetical protein E6C27_scaffold320G00130 [Cucumis melo var. makuwa]1.4e-0737.76Show/hide
Query:  KKQIAFEEAGQIRAPSPPKQT------EDQPSDAVGENEDDE--YYKFISHTIGKPMMNGLEDIIRTQAELQERAMRHEKQILDLELKIDNH---HQA
        +KQ+  E+A + R PSPPKQ+      + +  +A+ +++DD+  Y+KFI+  + +P+  G ED+ + QA LQE  ++++K + DLELK D+    HQA
Subjt:  KKQIAFEEAGQIRAPSPPKQT------EDQPSDAVGENEDDE--YYKFISHTIGKPMMNGLEDIIRTQAELQERAMRHEKQILDLELKIDNH---HQA

KAA0047757.1 hypothetical protein E6C27_scaffold1059G00180 [Cucumis melo var. makuwa]5.4e-1253.09Show/hide
Query:  GQIRAPSPPKQTEDQPSDAVGENE-DDEYYKFISHTIGKPMMNGLEDIIRTQAELQERAMRHEKQILDLELKIDN---HHQ
        G+  AP P KQ  +Q  +A GE++ +D Y+KFI  T GKP+M+G +D+ + Q +LQE   RHEKQI DLELKIDN   HHQ
Subjt:  GQIRAPSPPKQTEDQPSDAVGENE-DDEYYKFISHTIGKPMMNGLEDIIRTQAELQERAMRHEKQILDLELKIDN---HHQ

KAA0067817.1 hypothetical protein E6C27_scaffold2484G00210 [Cucumis melo var. makuwa]4.7e-0833.11Show/hide
Query:  LAKKQIAFEEAGQIRAPSPPKQTEDQPSDAVGENEDDEYYKFISHTIGKPMMNGLEDIIRTQAELQERAMRHEKQILDLELKIDNHHQAQHDQLASKISD
        L  KQI FE  GQ   PSPPKQ   Q       +++DEY KF        M+    + ++TQ +  +  ++                       AS  ++
Subjt:  LAKKQIAFEEAGQIRAPSPPKQTEDQPSDAVGENEDDEYYKFISHTIGKPMMNGLEDIIRTQAELQERAMRHEKQILDLELKIDNHHQAQHDQLASKISD

Query:  RQYKSMMNYNHAAITSLVPKPTVPPEFEEPLSDVEMD--VVPEPSKTR
         Q +++MNY H  I SLVP P  PPE EEPL++VE       EPS+ R
Subjt:  RQYKSMMNYNHAAITSLVPKPTVPPEFEEPLSDVEMD--VVPEPSKTR

TYK23898.1 gag-pol [Cucumis melo var. makuwa]1.6e-0852.94Show/hide
Query:  LAKKQIAFEEAGQIRAPSPPKQTEDQPSDAVGENED-DEYYKFISHTIGKPMMNGLEDIIRTQAELQE
        L  KQIA+E+ G+   PSP KQT +Q  +   E++D D+Y+KFIS T GKPMM+ LEDI + Q++LQE
Subjt:  LAKKQIAFEEAGQIRAPSPPKQTEDQPSDAVGENED-DEYYKFISHTIGKPMMNGLEDIIRTQAELQE

TYK29776.1 hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa]1.4e-0737.76Show/hide
Query:  KKQIAFEEAGQIRAPSPPKQT------EDQPSDAVGENEDDE--YYKFISHTIGKPMMNGLEDIIRTQAELQERAMRHEKQILDLELKIDNH---HQA
        +KQ+  E+A + R PSPPKQ+      + +  +A+ +++DD+  Y+KFI+  + +P+  G ED+ + QA LQE  ++++K + DLELK D+    HQA
Subjt:  KKQIAFEEAGQIRAPSPPKQT------EDQPSDAVGENEDDE--YYKFISHTIGKPMMNGLEDIIRTQAELQERAMRHEKQILDLELKIDNH---HQA

TrEMBL top hitse value%identityAlignment
A0A5A7TJU0 Uncharacterized protein6.6e-0837.76Show/hide
Query:  KKQIAFEEAGQIRAPSPPKQT------EDQPSDAVGENEDDE--YYKFISHTIGKPMMNGLEDIIRTQAELQERAMRHEKQILDLELKIDNH---HQA
        +KQ+  E+A + R PSPPKQ+      + +  +A+ +++DD+  Y+KFI+  + +P+  G ED+ + QA LQE  ++++K + DLELK D+    HQA
Subjt:  KKQIAFEEAGQIRAPSPPKQT------EDQPSDAVGENEDDE--YYKFISHTIGKPMMNGLEDIIRTQAELQERAMRHEKQILDLELKIDNH---HQA

A0A5A7U0L9 Uncharacterized protein2.6e-1253.09Show/hide
Query:  GQIRAPSPPKQTEDQPSDAVGENE-DDEYYKFISHTIGKPMMNGLEDIIRTQAELQERAMRHEKQILDLELKIDN---HHQ
        G+  AP P KQ  +Q  +A GE++ +D Y+KFI  T GKP+M+G +D+ + Q +LQE   RHEKQI DLELKIDN   HHQ
Subjt:  GQIRAPSPPKQTEDQPSDAVGENE-DDEYYKFISHTIGKPMMNGLEDIIRTQAELQERAMRHEKQILDLELKIDN---HHQ

A0A5A7VKU1 Uncharacterized protein2.3e-0833.11Show/hide
Query:  LAKKQIAFEEAGQIRAPSPPKQTEDQPSDAVGENEDDEYYKFISHTIGKPMMNGLEDIIRTQAELQERAMRHEKQILDLELKIDNHHQAQHDQLASKISD
        L  KQI FE  GQ   PSPPKQ   Q       +++DEY KF        M+    + ++TQ +  +  ++                       AS  ++
Subjt:  LAKKQIAFEEAGQIRAPSPPKQTEDQPSDAVGENEDDEYYKFISHTIGKPMMNGLEDIIRTQAELQERAMRHEKQILDLELKIDNHHQAQHDQLASKISD

Query:  RQYKSMMNYNHAAITSLVPKPTVPPEFEEPLSDVEMD--VVPEPSKTR
         Q +++MNY H  I SLVP P  PPE EEPL++VE       EPS+ R
Subjt:  RQYKSMMNYNHAAITSLVPKPTVPPEFEEPLSDVEMD--VVPEPSKTR

A0A5D3DK59 Gag-pol7.8e-0952.94Show/hide
Query:  LAKKQIAFEEAGQIRAPSPPKQTEDQPSDAVGENED-DEYYKFISHTIGKPMMNGLEDIIRTQAELQE
        L  KQIA+E+ G+   PSP KQT +Q  +   E++D D+Y+KFIS T GKPMM+ LEDI + Q++LQE
Subjt:  LAKKQIAFEEAGQIRAPSPPKQTEDQPSDAVGENED-DEYYKFISHTIGKPMMNGLEDIIRTQAELQE

A0A5D3E1H0 Uncharacterized protein6.6e-0837.76Show/hide
Query:  KKQIAFEEAGQIRAPSPPKQT------EDQPSDAVGENEDDE--YYKFISHTIGKPMMNGLEDIIRTQAELQERAMRHEKQILDLELKIDNH---HQA
        +KQ+  E+A + R PSPPKQ+      + +  +A+ +++DD+  Y+KFI+  + +P+  G ED+ + QA LQE  ++++K + DLELK D+    HQA
Subjt:  KKQIAFEEAGQIRAPSPPKQT------EDQPSDAVGENEDDE--YYKFISHTIGKPMMNGLEDIIRTQAELQERAMRHEKQILDLELKIDNH---HQA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCGGCAAGGGAAGTATGTACTTCTGTAGATGAAGTATCTCGCGAAGCTCAAGTCATGAAGTATTGCCTCGCGAAAAAGCAAATTGCCTTTGAGGAAGCTGGTCA
GATACGTGCTCCCTCGCCGCCTAAGCAAACAGAAGATCAGCCAAGTGATGCGGTGGGCGAGAATGAAGATGATGAGTATTACAAGTTCATTAGTCATACTATTGGGAAAC
CAATGATGAATGGACTTGAAGATATCATCCGAACCCAAGCAGAACTGCAAGAACGTGCGATGAGACATGAGAAGCAGATTTTGGACTTGGAGTTAAAAATTGACAATCAT
CATCAAGCACAACATGATCAACTCGCCTCTAAGATTTCTGATAGGCAATACAAGTCAATGATGAACTATAACCACGCGGCGATCACAAGTCTCGTGCCAAAACCTACCGT
TCCACCAGAATTTGAGGAACCCCTATCTGATGTTGAAATGGACGTTGTGCCAGAACCTTCCAAAACGCGGCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGCGGCAAGGGAAGTATGTACTTCTGTAGATGAAGTATCTCGCGAAGCTCAAGTCATGAAGTATTGCCTCGCGAAAAAGCAAATTGCCTTTGAGGAAGCTGGTCA
GATACGTGCTCCCTCGCCGCCTAAGCAAACAGAAGATCAGCCAAGTGATGCGGTGGGCGAGAATGAAGATGATGAGTATTACAAGTTCATTAGTCATACTATTGGGAAAC
CAATGATGAATGGACTTGAAGATATCATCCGAACCCAAGCAGAACTGCAAGAACGTGCGATGAGACATGAGAAGCAGATTTTGGACTTGGAGTTAAAAATTGACAATCAT
CATCAAGCACAACATGATCAACTCGCCTCTAAGATTTCTGATAGGCAATACAAGTCAATGATGAACTATAACCACGCGGCGATCACAAGTCTCGTGCCAAAACCTACCGT
TCCACCAGAATTTGAGGAACCCCTATCTGATGTTGAAATGGACGTTGTGCCAGAACCTTCCAAAACGCGGCTATAA
Protein sequenceShow/hide protein sequence
MSAAREVCTSVDEVSREAQVMKYCLAKKQIAFEEAGQIRAPSPPKQTEDQPSDAVGENEDDEYYKFISHTIGKPMMNGLEDIIRTQAELQERAMRHEKQILDLELKIDNH
HQAQHDQLASKISDRQYKSMMNYNHAAITSLVPKPTVPPEFEEPLSDVEMDVVPEPSKTRL