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PI0003497 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003497
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationchr08:22830563..22833799
RNA-Seq ExpressionPI0003497
SyntenyPI0003497
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0009579 - thylakoid (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AEO51756.1 chloroplast chlorophyll A/B binding protein [Dimocarpus longan]8.5e-0842.11Show/hide
Query:  TKESVHKVDCGPAAVVPIAVAG------WTGAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        TK++  K    P+A  P+   G        G+  G+YGFDPFG+GKPVEY       LDQNL KNM GD+ G+R+   EV + P  Q + +V G+
Subjt:  TKESVHKVDCGPAAVVPIAVAG------WTGAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV

THU46220.1 hypothetical protein C4D60_Mb09t02650 [Musa balbisiana]7.2e-0740Show/hide
Query:  TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        TK+S+ K    P +  P+   G     W      G+YGFDPFG+GKP EY       LDQNL KN  GDV G+R    +V + P  Q + +V G+
Subjt:  TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV

XP_002528105.1 chlorophyll a-b binding protein CP29.1, chloroplastic [Ricinus communis]7.2e-0738.95Show/hide
Query:  TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        TK+S  K    P +  P+   G     W      G+YGFDPFG+GKP EY       LDQNL KN+ GD+ G+R    +V + P  Q + +V G+
Subjt:  TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV

XP_012087873.1 chlorophyll a-b binding protein CP29.1, chloroplastic [Jatropha curcas]5.5e-0740Show/hide
Query:  TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        TK+S  K    P++  P+   G     W      G+YGFDPFG+GKP EY       LDQNL KN+ GDV G+R    +V + P  Q + +V G+
Subjt:  TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV

XP_015897179.1 chlorophyll a-b binding protein CP29.2, chloroplastic [Ziziphus jujuba]7.2e-0740.43Show/hide
Query:  KESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        K+S  K    P++  P+   G T   W      G+YGFDPFG+GKP EY       LDQNL KN+ GDV G+R    +V + P  Q + +V G+
Subjt:  KESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV

TrEMBL top hitse value%identityAlignment
A0A067JKE4 Chlorophyll a-b binding protein, chloroplastic2.7e-0740Show/hide
Query:  TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        TK+S  K    P++  P+   G     W      G+YGFDPFG+GKP EY       LDQNL KN+ GDV G+R    +V + P  Q + +V G+
Subjt:  TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV

A0A4S8IDL3 Chlorophyll a-b binding protein, chloroplastic3.5e-0740Show/hide
Query:  TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        TK+S+ K    P +  P+   G     W      G+YGFDPFG+GKP EY       LDQNL KN  GDV G+R    +V + P  Q + +V G+
Subjt:  TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV

A0A6P4AP94 Chlorophyll a-b binding protein, chloroplastic3.5e-0740.43Show/hide
Query:  KESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        K+S  K    P++  P+   G T   W      G+YGFDPFG+GKP EY       LDQNL KN+ GDV G+R    +V + P  Q + +V G+
Subjt:  KESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV

B9SQ36 Chlorophyll a-b binding protein, chloroplastic3.5e-0738.95Show/hide
Query:  TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        TK+S  K    P +  P+   G     W      G+YGFDPFG+GKP EY       LDQNL KN+ GD+ G+R    +V + P  Q + +V G+
Subjt:  TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV

G3FNQ6 Chlorophyll a-b binding protein, chloroplastic4.1e-0842.11Show/hide
Query:  TKESVHKVDCGPAAVVPIAVAG------WTGAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        TK++  K    P+A  P+   G        G+  G+YGFDPFG+GKPVEY       LDQNL KNM GD+ G+R+   EV + P  Q + +V G+
Subjt:  TKESVHKVDCGPAAVVPIAVAG------WTGAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV

SwissProt top hitse value%identityAlignment
Q07473 Chlorophyll a-b binding protein CP29.1, chloroplastic1.8e-0843.04Show/hide
Query:  PAAVVPIAVAGW-TGAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        P A+ P     W  G+  G+YGFDPFG+GKP EY       LDQNL KN+ GDV G+R    +  + P  Q + +V G+
Subjt:  PAAVVPIAVAGW-TGAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV

Q9S7W1 Chlorophyll a-b binding protein CP29.3, chloroplastic3.7e-0643.08Show/hide
Query:  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        G+  G+ GFDPFG+GKP EY       LDQNL KN+ GD+ G      E+   P  Q + +V G+
Subjt:  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV

Q9XF88 Chlorophyll a-b binding protein CP29.2, chloroplastic4.4e-0744.62Show/hide
Query:  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        G+  G+YGFDPFG+GKP EY       LDQNL KN+ G+V G+R    +  + P  Q + +V G+
Subjt:  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV

Arabidopsis top hitse value%identityAlignment
AT2G40100.1 light harvesting complex photosystem II2.6e-0743.08Show/hide
Query:  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        G+  G+ GFDPFG+GKP EY       LDQNL KN+ GD+ G      E+   P  Q + +V G+
Subjt:  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV

AT2G40100.2 light harvesting complex photosystem II2.6e-0743.08Show/hide
Query:  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        G+  G+ GFDPFG+GKP EY       LDQNL KN+ GD+ G      E+   P  Q + +V G+
Subjt:  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV

AT3G08940.1 light harvesting complex photosystem II3.1e-0844.62Show/hide
Query:  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        G+  G+YGFDPFG+GKP EY       LDQNL KN+ G+V G+R    +  + P  Q + +V G+
Subjt:  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV

AT3G08940.2 light harvesting complex photosystem II3.1e-0844.62Show/hide
Query:  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        G+  G+YGFDPFG+GKP EY       LDQNL KN+ G+V G+R    +  + P  Q + +V G+
Subjt:  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV

AT5G01530.1 light harvesting complex photosystem II1.3e-0943.04Show/hide
Query:  PAAVVPIAVAGW-TGAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV
        P A+ P     W  G+  G+YGFDPFG+GKP EY       LDQNL KN+ GDV G+R    +  + P  Q + +V G+
Subjt:  PAAVVPIAVAGW-TGAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCACCAAAGAAAGCGTTCATAAAGTTGACTGTGGACCGGCAGCTGTGGTACCCATAGCCGTGGCGGGCTGGACAGGAGCTTGGTGGGGGAATTATGGGTTTGACCC
GTTTGGGGTGGGGAAACCAGTGGAGTACTTGGACCAGAACTTGGTTAAGAATATGGGTGGCGATGTGTTTGGATCTCGTATTCTTGAATGTGAAGTCGACACCGTACCAG
CCATACAGGTTTGGCACCAAGTTTGTGGAGTGGTGATCTCCAGCGGATTTGCCCAACAATCTCTCCTCTTCAATTCCGCCATTGTCATAACAGTCTTCAATTGTTCCAAC
GCCGTTAAGGAAGAATTCCTTAGGTTGGCTCCTCACCGGAAACTTGCGGTTCCTCTTTGTTGCGTACTATCAAATTCTAGTTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCACCAAAGAAAGCGTTCATAAAGTTGACTGTGGACCGGCAGCTGTGGTACCCATAGCCGTGGCGGGCTGGACAGGAGCTTGGTGGGGGAATTATGGGTTTGACCC
GTTTGGGGTGGGGAAACCAGTGGAGTACTTGGACCAGAACTTGGTTAAGAATATGGGTGGCGATGTGTTTGGATCTCGTATTCTTGAATGTGAAGTCGACACCGTACCAG
CCATACAGGTTTGGCACCAAGTTTGTGGAGTGGTGATCTCCAGCGGATTTGCCCAACAATCTCTCCTCTTCAATTCCGCCATTGTCATAACAGTCTTCAATTGTTCCAAC
GCCGTTAAGGAAGAATTCCTTAGGTTGGCTCCTCACCGGAAACTTGCGGTTCCTCTTTGTTGCGTACTATCAAATTCTAGTTCCTGA
Protein sequenceShow/hide protein sequence
MPTKESVHKVDCGPAAVVPIAVAGWTGAWWGNYGFDPFGVGKPVEYLDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGVVISSGFAQQSLLFNSAIVITVFNCSN
AVKEEFLRLAPHRKLAVPLCCVLSNSSS