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PI0003528 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003528
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionIntegrase
Genome locationchr03:13538920..13551025
RNA-Seq ExpressionPI0003528
SyntenyPI0003528
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038053.1 uncharacterized protein E6C27_scaffold36G002560 [Cucumis melo var. makuwa]6.1e-5372.44Show/hide
Query:  MNDCETVALTQVTSNVFKNGVSEKMTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGEFLVDDENCSAIESLGWDYREKEAYNELFNPKE
        +ND ET+ALTQ T ++FKNGV EKM DP SF +P SIGGMDLGRALCDL ASIN MSLSIF KLE+ EF  DDE  SAIESL WDY E+E Y+ELFN +E
Subjt:  MNDCETVALTQVTSNVFKNGVSEKMTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGEFLVDDENCSAIESLGWDYREKEAYNELFNPKE

Query:  FFEDENPSYILKEVNTVYGKRKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLK
        FFE+E+ SYILKEVN V G+R FESLDLQTK +KKTKPSIE+P KL+LK L NHLK
Subjt:  FFEDENPSYILKEVNTVYGKRKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLK

KAA0040570.1 uncharacterized protein E6C27_scaffold262G001400 [Cucumis melo var. makuwa]1.3e-3958.08Show/hide
Query:  GVSEKMTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGE--------------------------FLVDDENCSAIESLGWDYREKEAYN
        G  EK+TDP S T+P SI  M L RAL DL  SINLM LSI KKL +GE                          F +D E+C+AIE LGWDY E+EAY 
Subjt:  GVSEKMTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGE--------------------------FLVDDENCSAIESLGWDYREKEAYN

Query:  ELFNPKEFFEDENPSYILKEVNTVYGKRKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLKYAYL
        ELF+ KEF E++ P YILKEVNTV GK KFESLDLQTK E KT+ SIE+P KL+LKPL NHLKYAYL
Subjt:  ELFNPKEFFEDENPSYILKEVNTVYGKRKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLKYAYL

KAA0052866.1 uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa]2.0e-4862.21Show/hide
Query:  TSNVFKNGVSEKMTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGE------------------------FLVDDENCSAIESLGWDYRE
        TS++FKNG+ EKMT+P SFTVPCSIG MDLGRALC+L  SINLM LSIFKKLE+ E                        F  DDENC+ IE LGW+Y E
Subjt:  TSNVFKNGVSEKMTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGE------------------------FLVDDENCSAIESLGWDYRE

Query:  KEAYNELFNPKEFFEDENPSYILKEVNTVYGKRKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLKYAYL
        KEAY ELF+ +EFFE+++PSYILKEVN V  ++KFESLDLQ K EKKTKPSIE+P +L+LK L NHLKY YL
Subjt:  KEAYNELFNPKEFFEDENPSYILKEVNTVYGKRKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLKYAYL

TYJ96947.1 integrase [Cucumis melo var. makuwa]2.9e-3459.57Show/hide
Query:  MTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGEFLVDDENCS----AIESLGWDYREKEAYNELFNPKEFFEDENPSYILKEVNTVYGK
        MTD GSF V CSIG M LGR+LCDLGASINLM LSIFKK ++GE             +I  L    +++E+Y +LF  ++F E++ P+YIL+EVN V G+
Subjt:  MTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGEFLVDDENCS----AIESLGWDYREKEAYNELFNPKEFFEDENPSYILKEVNTVYGK

Query:  RKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLKYAYLG
        +KFESLDLQTK EKKTK SIE+P +L+LKP LNHLKYAYLG
Subjt:  RKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLKYAYLG

TYJ99425.1 uncharacterized protein E5676_scaffold316G00120 [Cucumis melo var. makuwa]2.1e-4561.11Show/hide
Query:  MNDCETVALTQVTSNVFKNGVSEKMTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGEFLVDDENCSAIESLGWDYREKEAYNELFNPKE
        +ND + VALTQ T+N+FKNGV +KMTDPGSFT+P SIG +DLGRALC+L A++NL+ LSIFKKL++GE           + L      +EAY ELF+ +E
Subjt:  MNDCETVALTQVTSNVFKNGVSEKMTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGEFLVDDENCSAIESLGWDYREKEAYNELFNPKE

Query:  FFEDENPSYILKEVNTVYGKRKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLKYAYLGD
        F E++ P Y L+EVNT +GKRKFE LDLQTKDEKK KPSI++P +L+LKPL NHLKYAYLG+
Subjt:  FFEDENPSYILKEVNTVYGKRKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLKYAYLGD

TrEMBL top hitse value%identityAlignment
A0A5A7T4Y2 Uncharacterized protein3.0e-5372.44Show/hide
Query:  MNDCETVALTQVTSNVFKNGVSEKMTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGEFLVDDENCSAIESLGWDYREKEAYNELFNPKE
        +ND ET+ALTQ T ++FKNGV EKM DP SF +P SIGGMDLGRALCDL ASIN MSLSIF KLE+ EF  DDE  SAIESL WDY E+E Y+ELFN +E
Subjt:  MNDCETVALTQVTSNVFKNGVSEKMTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGEFLVDDENCSAIESLGWDYREKEAYNELFNPKE

Query:  FFEDENPSYILKEVNTVYGKRKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLK
        FFE+E+ SYILKEVN V G+R FESLDLQTK +KKTKPSIE+P KL+LK L NHLK
Subjt:  FFEDENPSYILKEVNTVYGKRKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLK

A0A5A7UF79 Uncharacterized protein9.9e-4962.21Show/hide
Query:  TSNVFKNGVSEKMTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGE------------------------FLVDDENCSAIESLGWDYRE
        TS++FKNG+ EKMT+P SFTVPCSIG MDLGRALC+L  SINLM LSIFKKLE+ E                        F  DDENC+ IE LGW+Y E
Subjt:  TSNVFKNGVSEKMTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGE------------------------FLVDDENCSAIESLGWDYRE

Query:  KEAYNELFNPKEFFEDENPSYILKEVNTVYGKRKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLKYAYL
        KEAY ELF+ +EFFE+++PSYILKEVN V  ++KFESLDLQ K EKKTKPSIE+P +L+LK L NHLKY YL
Subjt:  KEAYNELFNPKEFFEDENPSYILKEVNTVYGKRKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLKYAYL

A0A5D3BCU9 Integrase1.4e-3459.57Show/hide
Query:  MTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGEFLVDDENCS----AIESLGWDYREKEAYNELFNPKEFFEDENPSYILKEVNTVYGK
        MTD GSF V CSIG M LGR+LCDLGASINLM LSIFKK ++GE             +I  L    +++E+Y +LF  ++F E++ P+YIL+EVN V G+
Subjt:  MTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGEFLVDDENCS----AIESLGWDYREKEAYNELFNPKEFFEDENPSYILKEVNTVYGK

Query:  RKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLKYAYLG
        +KFESLDLQTK EKKTK SIE+P +L+LKP LNHLKYAYLG
Subjt:  RKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLKYAYLG

A0A5D3BM69 Uncharacterized protein1.0e-4561.11Show/hide
Query:  MNDCETVALTQVTSNVFKNGVSEKMTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGEFLVDDENCSAIESLGWDYREKEAYNELFNPKE
        +ND + VALTQ T+N+FKNGV +KMTDPGSFT+P SIG +DLGRALC+L A++NL+ LSIFKKL++GE           + L      +EAY ELF+ +E
Subjt:  MNDCETVALTQVTSNVFKNGVSEKMTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGEFLVDDENCSAIESLGWDYREKEAYNELFNPKE

Query:  FFEDENPSYILKEVNTVYGKRKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLKYAYLGD
        F E++ P Y L+EVNT +GKRKFE LDLQTKDEKK KPSI++P +L+LKPL NHLKYAYLG+
Subjt:  FFEDENPSYILKEVNTVYGKRKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLKYAYLGD

A0A5D3C0Z2 Integrase_H2C2 domain-containing protein6.4e-4058.08Show/hide
Query:  GVSEKMTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGE--------------------------FLVDDENCSAIESLGWDYREKEAYN
        G  EK+TDP S T+P SI  M L RAL DL  SINLM LSI KKL +GE                          F +D E+C+AIE LGWDY E+EAY 
Subjt:  GVSEKMTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGE--------------------------FLVDDENCSAIESLGWDYREKEAYN

Query:  ELFNPKEFFEDENPSYILKEVNTVYGKRKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLKYAYL
        ELF+ KEF E++ P YILKEVNTV GK KFESLDLQTK E KT+ SIE+P KL+LKPL NHLKYAYL
Subjt:  ELFNPKEFFEDENPSYILKEVNTVYGKRKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLKYAYL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGACTGCGAAACAGTGGCTCTAACGCAGGTAACGAGCAACGTCTTCAAGAATGGGGTATCCGAGAAGATGACAGACCCTGGTAGCTTCACGGTGCCATGCTCAAT
AGGCGGTATGGATCTAGGTCGCGCATTATGCGATCTGGGAGCCAGTATCAACCTAATGTCTCTCTCTATCTTCAAGAAATTGGAGCTAGGGGAGTTCCTTGTTGATGATG
AAAATTGCAGTGCGATAGAATCCCTCGGGTGGGATTATCGCGAGAAAGAAGCATATAATGAACTGTTCAACCCTAAAGAATTCTTTGAAGACGAAAACCCCAGTTATATT
CTGAAAGAAGTGAACACCGTGTATGGCAAAAGGAAGTTTGAGTCTTTGGATCTGCAAACCAAAGACGAGAAGAAGACAAAACCATCAATTGAACAACCACAAAAGCTAAA
GCTTAAGCCTTTGCTCAACCACCTAAAGTATGCATATTTGGGGGACTGTTGGGGCAATTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGACTGCGAAACAGTGGCTCTAACGCAGGTAACGAGCAACGTCTTCAAGAATGGGGTATCCGAGAAGATGACAGACCCTGGTAGCTTCACGGTGCCATGCTCAAT
AGGCGGTATGGATCTAGGTCGCGCATTATGCGATCTGGGAGCCAGTATCAACCTAATGTCTCTCTCTATCTTCAAGAAATTGGAGCTAGGGGAGTTCCTTGTTGATGATG
AAAATTGCAGTGCGATAGAATCCCTCGGGTGGGATTATCGCGAGAAAGAAGCATATAATGAACTGTTCAACCCTAAAGAATTCTTTGAAGACGAAAACCCCAGTTATATT
CTGAAAGAAGTGAACACCGTGTATGGCAAAAGGAAGTTTGAGTCTTTGGATCTGCAAACCAAAGACGAGAAGAAGACAAAACCATCAATTGAACAACCACAAAAGCTAAA
GCTTAAGCCTTTGCTCAACCACCTAAAGTATGCATATTTGGGGGACTGTTGGGGCAATTATTGA
Protein sequenceShow/hide protein sequence
MNDCETVALTQVTSNVFKNGVSEKMTDPGSFTVPCSIGGMDLGRALCDLGASINLMSLSIFKKLELGEFLVDDENCSAIESLGWDYREKEAYNELFNPKEFFEDENPSYI
LKEVNTVYGKRKFESLDLQTKDEKKTKPSIEQPQKLKLKPLLNHLKYAYLGDCWGNY