CuGenDBv2

Gene ID	PI0003537
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	LOW QUALITY PROTEIN: uncharacterized protein At4g13200, chloroplastic
Genome location	chr01:20420540..20423751
RNA-Seq Expression	PI0003537
Synteny	PI0003537
Gene Ontology terms	GO:0010027 - thylakoid membrane organization (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domains	IPR040003 - Plastoglobular protein 18-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004139667.1 uncharacterized protein At4g13200, chloroplastic [Cucumis sativus]

6.9e-79

92.7

Show/hide

Query:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSSGVTSSVSQSPFSLV TKPKITHYS PSLLLFRSSSTPSNLKFRGISHFQPNG SRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPTYSSPDVDSETVVNQDPPLGD
        GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARD+KEVQGP++SSVISP IEV SSPT SSPD DSE+VVNQDP LG+
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPTYSSPDVDSETVVNQDPPLGD

XP_008447268.1 PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis melo]

1.3e-77

91.01

Show/hide

Query:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSS +TSSVS SPFSLVPTKPKITHYSSPSLL FRSSSTPSNL+FRGISHFQPNGSSR LARCSSGDGDSRT+LDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPTYSSPDVDSETVVNQDPPLGD
        GIG+LQAEQQKQITDFQDEVIERAKKAKEKAAR+AKEVQ P++SSVISPTIEVSSSPT SSPD DSE+ VNQDPPLGD
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPTYSSPDVDSETVVNQDPPLGD

XP_022953678.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita moschata]

3.0e-58

73.51

Show/hide

Query:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSSGV SSVS S FS+VPTK KITH SSPSL+ FRSSST SNLKFR      PNGS RF+A CSSGDGD+RTVLDAFF+GKA AE LTER+EST+GEVL 
Subjt:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPT-------YSSPDVDSETVVNQDPPLGD
         IGRLQAE+Q+QI DFQ+EVI+RAKKAKEKA RDAKE QGPI+SS+IS TIEV+SSPT        SSP+  SETVVNQDPP GD
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPT-------YSSPDVDSETVVNQDPPLGD

XP_023548651.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita pepo subsp. pepo]

3.3e-57

74.05

Show/hide

Query:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSSGV SSVS S FS VPTK KITH SSPSL+ FRSSST SNLKFR      P+GS RF+A CSSGDGD+RTVLDAFFLGKA AE LTER+EST+G VLS
Subjt:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPT-------YSSPDVDSETVVNQDPPLGD
         IGRLQAE+Q+QI DFQ+EVIERAKKAKEKA RDAKE QGPI+SS+IS TIEV+SSPT        SSP+  SETVVNQDPP GD
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPT-------YSSPDVDSETVVNQDPPLGD

XP_038900031.1 uncharacterized protein At4g13200, chloroplastic [Benincasa hispida]

2.2e-77

88.11

Show/hide

Query:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSSGVTSSVSQSPFSLVPTKPKITHYSS SLLLFRSSSTPSNLKFR ISHFQPNGS RF+ARCSSGDGDSRTVLDAFFLGKALAEALTERIEST+GEVLS
Subjt:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPT-------YSSPDVDSETVVNQDPPLGD
        GIGRLQAEQQKQITDFQ+EVIERAKKAK+KAARDAKEVQGP++SS+ SPTIEV+SSPT        S+PD DSETVVNQDPPLGD
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPT-------YSSPDVDSETVVNQDPPLGD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6Q2 Uncharacterized protein

3.4e-79

92.7

Show/hide

Query:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSSGVTSSVSQSPFSLV TKPKITHYS PSLLLFRSSSTPSNLKFRGISHFQPNG SRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPTYSSPDVDSETVVNQDPPLGD
        GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARD+KEVQGP++SSVISP IEV SSPT SSPD DSE+VVNQDP LG+
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPTYSSPDVDSETVVNQDPPLGD

A0A1S3BHX5 uncharacterized protein At4g13200, chloroplastic isoform X1

6.3e-78

91.01

Show/hide

Query:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSS +TSSVS SPFSLVPTKPKITHYSSPSLL FRSSSTPSNL+FRGISHFQPNGSSR LARCSSGDGDSRT+LDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPTYSSPDVDSETVVNQDPPLGD
        GIG+LQAEQQKQITDFQDEVIERAKKAKEKAAR+AKEVQ P++SSVISPTIEVSSSPT SSPD DSE+ VNQDPPLGD
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPTYSSPDVDSETVVNQDPPLGD

A0A6J1DJG4 uncharacterized protein At4g13200, chloroplastic

1.7e-54

69.19

Show/hide

Query:  SGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARC---------SSGDGDSRTVLDAFFLGKALAEALTERIES
        SG+ +SVS SPFSL+ TKPK TH+SSP+L + RS STPSNLK RGI HF PN S R  ARC          SGDGDSRTVLDAFFLGKALAEALTERIES
Subjt:  SGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARC---------SSGDGDSRTVLDAFFLGKALAEALTERIES

Query:  TIGEVLSGIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSS--PTYSSPDVDSETVVNQDPPL
        T+GEVLSGIGRLQAE+QKQI DFQ+EVIERAK+AK+KAARD+ EVQ PI+ S+ SPTI V+S+     S PD  SE+ VN DPPL
Subjt:  TIGEVLSGIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSS--PTYSSPDVDSETVVNQDPPL

A0A6J1GNZ1 uncharacterized protein At4g13200, chloroplastic-like

1.5e-58

73.51

Show/hide

Query:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSSGV SSVS S FS+VPTK KITH SSPSL+ FRSSST SNLKFR      PNGS RF+A CSSGDGD+RTVLDAFF+GKA AE LTER+EST+GEVL 
Subjt:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPT-------YSSPDVDSETVVNQDPPLGD
         IGRLQAE+Q+QI DFQ+EVI+RAKKAKEKA RDAKE QGPI+SS+IS TIEV+SSPT        SSP+  SETVVNQDPP GD
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPT-------YSSPDVDSETVVNQDPPLGD

A0A6J1JX27 uncharacterized protein At4g13200, chloroplastic-like

2.1e-57

72.97

Show/hide

Query:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSSGV SSVS S FS++PT+ KITH SSPSL+ FRSSST SNLKFR      PNGS RF+A CSSGDGD+RTVLDAFFLGKA AE LTER+EST+GEVLS
Subjt:  MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPT-------YSSPDVDSETVVNQDPPLGD
         IGRLQAE+Q+QI DFQ+EVIERAKKAKEKA RDAKE QGPI+SS++S TIEV+SSPT        SS +  SETVVNQDPP GD
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPT-------YSSPDVDSETVVNQDPPLGD

SwissProt top hits

e value

%identity

Alignment

P73628 Thylakoid protein sll1769

1.4e-05

Show/hide

Query:  VLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIE
        VL AFFLG+A AE L+E++E  +   LS +G+  AEQ++ +  F  EV  RA     +       V GP+++  +  T++
Subjt:  VLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIE

Q8LDV3 Uncharacterized protein At4g13200, chloroplastic

4.7e-22

55.45

Show/hide

Query:  SGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVI----SPTIEVSSSPTYS
        SG+ ++++VLDAFFLGKALAE + ERIEST+GEVLS IG+ QAEQQKQ+ + Q+EV+ERAKKAKE+AAR+  E QG + S  +    +P   V +S T S
Subjt:  SGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVI----SPTIEVSSSPTYS

Query:  SPDVDSETVV
        +  V+S+T++
Subjt:  SPDVDSETVV

Arabidopsis top hits

e value

%identity

Alignment

AT4G13200.1 unknown protein

3.4e-23

55.45

Show/hide

Query:  SGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVI----SPTIEVSSSPTYS
        SG+ ++++VLDAFFLGKALAE + ERIEST+GEVLS IG+ QAEQQKQ+ + Q+EV+ERAKKAKE+AAR+  E QG + S  +    +P   V +S T S
Subjt:  SGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVI----SPTIEVSSSPTYS

Query:  SPDVDSETVV
        +  V+S+T++
Subjt:  SPDVDSETVV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGTAGTGGGGTTACATCTTCTGTTTCCCAATCTCCTTTTTCACTTGTACCCACTAAACCTAAAATTACCCATTATTCATCTCCATCTCTCCTTCTATTTCGCTCCTC
TTCAACTCCTTCAAATCTCAAATTTCGTGGAATTTCACATTTTCAACCAAATGGGTCTTCCAGATTCTTAGCTCGTTGCAGCTCTGGTGATGGTGACAGCAGGACCGTTC
TAGATGCCTTTTTTTTAGGAAAAGCTTTGGCAGAAGCCTTAACTGAGCGAATCGAGTCAACAATTGGAGAGGTTTTGAGTGGGATTGGTAGGCTGCAAGCTGAACAACAA
AAACAAATTACTGATTTCCAGGATGAAGTGATAGAAAGAGCTAAAAAGGCCAAGGAAAAAGCAGCACGTGATGCCAAAGAAGTACAAGGACCCATTACCTCTTCAGTAAT
ATCGCCTACAATCGAAGTTTCTTCGTCTCCAACTTATTCAAGTCCCGATGTAGATTCAGAAACTGTTGTGAATCAGGATCCTCCTCTTGGTGACTAA

mRNA sequence

Show/hide mRNA sequence

TCCATTTACTTAGGCTACCAATTTCCAGTTCATGAAAGTGGGAATTGGGTAAGCCGAACGAGGAATGAAGCAAAAACAGGGTCGGTTCTAAGTCATTGTCATCACATATC
TCAAACCCACAATACAAAATTTCCATTTTTATTTTCCCCCCCACCAAAGATCTTTCTTTTATAAATTCCTGTTTGGCTCTCAAGAAAACGAGCGAGAAACTCTGAGAAAG
TGACGCCGTGTAGTTTTCCATTCCATTGCACAATATGAGTAGTGGGGTTACATCTTCTGTTTCCCAATCTCCTTTTTCACTTGTACCCACTAAACCTAAAATTACCCATT
ATTCATCTCCATCTCTCCTTCTATTTCGCTCCTCTTCAACTCCTTCAAATCTCAAATTTCGTGGAATTTCACATTTTCAACCAAATGGGTCTTCCAGATTCTTAGCTCGT
TGCAGCTCTGGTGATGGTGACAGCAGGACCGTTCTAGATGCCTTTTTTTTAGGAAAAGCTTTGGCAGAAGCCTTAACTGAGCGAATCGAGTCAACAATTGGAGAGGTTTT
GAGTGGGATTGGTAGGCTGCAAGCTGAACAACAAAAACAAATTACTGATTTCCAGGATGAAGTGATAGAAAGAGCTAAAAAGGCCAAGGAAAAAGCAGCACGTGATGCCA
AAGAAGTACAAGGACCCATTACCTCTTCAGTAATATCGCCTACAATCGAAGTTTCTTCGTCTCCAACTTATTCAAGTCCCGATGTAGATTCAGAAACTGTTGTGAATCAG
GATCCTCCTCTTGGTGACTAAGAGTAATGTTCATTATATCAATTTCTTTTGGTTATAGACTTACAGGGAATGTAACCTATTTACCGATGATGATAATTAAGTTATTTGGC
CTTGAAATCGTATAGTACTTATCTTCTTTAAGGTTCTGTCTATTAGATATCTTTTGAGTTTCTTGACATCGAATATTGTTAGATGGAACAACCTGGGTGTTTGACTTATG
GGTTTGAAATTAGAGGGTTTGACATTTGAAGCCAAGGTATGTTTGATCGCTTAGAACGGAAATGGAAACCAAATTCATGGTTTTGAA

Protein sequence

Show/hide protein sequence

MSSGVTSSVSQSPFSLVPTKPKITHYSSPSLLLFRSSSTPSNLKFRGISHFQPNGSSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQ
KQITDFQDEVIERAKKAKEKAARDAKEVQGPITSSVISPTIEVSSSPTYSSPDVDSETVVNQDPPLGD

PI0003537 (gene) of Melon (PI 482460) v1 genome