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PI0003569 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003569
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:15721977..15723443
RNA-Seq ExpressionPI0003569
SyntenyPI0003569
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.9e-6368.98Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYD  GNTYN+GWRDNPNLRWGN+NQ+ TQA P+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSPSLKGTR
        SFQ EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL  P + E+KV S    L  +N+ KEE  E N S  + K  +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSPSLKGTR

KAA0038454.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.2e-6268.45Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTI
        MLNMT LLTSFVQG  +KV KCGVC L+GH NDKCP+++E+ N++RKYD  GNTYN+GWRDNPNLRWGN+NQ+ TQA P+S+NQGTNLED++KALATNT 
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSPSLKGTR
        SFQ EMKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL  P + E+KV S    L  +N+ KEE  E N S  + K  +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSPSLKGTR

KAA0060347.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.2e-6166.85Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTISFQ
        MTT LTSFVQG  +KV KCGVCGL+GH NDKCP ++E+ N++R+Y+LQGNTYN+GWRDNPNLRWGN+NQ+ TQA  +S+NQGTNL+D++KALATN +SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEE-KVPSNPDLLIDENKKKEENKENNASSPSLKGTR
         EMK+QM+Q+T AISK++GKGKLPAQP+HANVSAISLRSGKIL  P +EE KV S P  L  +N+ KEE  E N SS + K  +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEE-KVPSNPDLLIDENKKKEENKENNASSPSLKGTR

KAA0065554.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.0e-6166.84Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YD  GNTYN+GWRDNP LRWGN+NQ+  QA  +S+NQGTNLED++KALA NT+
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSPSLKGTR
        SFQ EMKQQM+QLT AISK++GKGKLPAQP+HANVSAISLRSGKIL  P + E+KV S    L  +N+ KEEN E N S  ++K  +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSPSLKGTR

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]5.6e-6367.91Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YD  GNTYN GWRDNPNLRWGN+NQ+ TQA P+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSPSLKGTR
        SFQ +MKQQM+QLT  ISK++GKGKLPAQPDH NVSAISLRSGKIL  P + E+KV S    L  +N+ KEE  E N+SS + K  +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSPSLKGTR

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032912.7e-6367.91Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YD  GNTYN GWRDNPNLRWGN+NQ+ TQA P+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSPSLKGTR
        SFQ +MKQQM+QLT  ISK++GKGKLPAQPDH NVSAISLRSGKIL  P + E+KV S    L  +N+ KEE  E N+SS + K  +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSPSLKGTR

A0A5A7T4R3 Retrotransposon gag protein3.0e-6268.45Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTI
        MLNMT LLTSFVQG  +KV KCGVC L+GH NDKCP+++E+ N++RKYD  GNTYN+GWRDNPNLRWGN+NQ+ TQA P+S+NQGTNLED++KALATNT 
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSPSLKGTR
        SFQ EMKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL  P + E+KV S    L  +N+ KEE  E N S  + K  +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSPSLKGTR

A0A5A7V0L2 Retrotransposon gag protein2.5e-6166.85Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTISFQ
        MTT LTSFVQG  +KV KCGVCGL+GH NDKCP ++E+ N++R+Y+LQGNTYN+GWRDNPNLRWGN+NQ+ TQA  +S+NQGTNL+D++KALATN +SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEE-KVPSNPDLLIDENKKKEENKENNASSPSLKGTR
         EMK+QM+Q+T AISK++GKGKLPAQP+HANVSAISLRSGKIL  P +EE KV S P  L  +N+ KEE  E N SS + K  +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEE-KVPSNPDLLIDENKKKEENKENNASSPSLKGTR

A0A5A7VE49 Retrotransposon gag protein1.9e-6166.84Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YD  GNTYN+GWRDNP LRWGN+NQ+  QA  +S+NQGTNLED++KALA NT+
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSPSLKGTR
        SFQ EMKQQM+QLT AISK++GKGKLPAQP+HANVSAISLRSGKIL  P + E+KV S    L  +N+ KEEN E N S  ++K  +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSPSLKGTR

E5GBZ4 Retrotransposon gag protein9.3e-6468.98Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYD  GNTYN+GWRDNPNLRWGN+NQ+ TQA P+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSPSLKGTR
        SFQ EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL  P + E+KV S    L  +N+ KEE  E N S  + K  +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSPSLKGTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATGACTACTCTACTAACCTCTTTTGTCCAAGGTGGAAATGTGAAAGTTGCGAAATGTGGAGTATGTGGACTAATAGGACATCCCAATGATAAGTGCCCTGA
CCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCTCCAAGGAAATACTTACAACGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAAC
CCACGCAAGCAACTCCTTCTTCAAACAATCAAGGTACAAATTTGGAGGATTTGGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATG
TCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTGCCAGCTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCA
ACCTCCTCCAAGTGAAGAAAAGGTACCATCTAACCCTGACCTTCTAATTGATGAAAACAAGAAAAAGGAAGAAAATAAAGAAAACAATGCCTCTTCTCCTTCTTTAAAAG
GAACCAGGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATGACTACTCTACTAACCTCTTTTGTCCAAGGTGGAAATGTGAAAGTTGCGAAATGTGGAGTATGTGGACTAATAGGACATCCCAATGATAAGTGCCCTGA
CCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCTCCAAGGAAATACTTACAACGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAAC
CCACGCAAGCAACTCCTTCTTCAAACAATCAAGGTACAAATTTGGAGGATTTGGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATG
TCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTGCCAGCTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCA
ACCTCCTCCAAGTGAAGAAAAGGTACCATCTAACCCTGACCTTCTAATTGATGAAAACAAGAAAAAGGAAGAAAATAAAGAAAACAATGCCTCTTCTCCTTCTTTAAAAG
GAACCAGGGATTGA
Protein sequenceShow/hide protein sequence
MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDLQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALATNTISFQNEMKQQM
SQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKKEENKENNASSPSLKGTRD