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PI0003578 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003578
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationchr04:11966345..11967277
RNA-Seq ExpressionPI0003578
SyntenyPI0003578
Gene Ontology termsGO:0010073 - meristem maintenance (biological process)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036767.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]1.2e-1979.37Show/hide
Query:  RLNSSRFRDVADDPQQFLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQH
        R N+ R R+VADDPQQ L+ICN+NE+YMENIHYMYDVPIVPAPVQRRR  VQEPD+LEEV+QH
Subjt:  RLNSSRFRDVADDPQQFLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQH

KAA0051233.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.2e-1979.37Show/hide
Query:  RLNSSRFRDVADDPQQFLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQH
        R N+ R R+VADDPQQ L+ICN+NE+YMENIHYMYDVPIVPAPVQRRR  VQEPD+LEEV+QH
Subjt:  RLNSSRFRDVADDPQQFLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQH

KAA0053567.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.3e-2144.85Show/hide
Query:  GTCLIFFNLIRLSESRTKLSWIVCRISVRTVTTYGRRLNSS----------------------------------RFRDVADDPQQF-------------
        GTCLIFFNL+RLS SR KLS+I C ISVRTVTTYG RL  S                                  RF       +QF             
Subjt:  GTCLIFFNLIRLSESRTKLSWIVCRISVRTVTTYGRRLNSS----------------------------------RFRDVADDPQQF-------------

Query:  ------------------LDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQHV
                          L+ICN+NE+YMENIHYMYDV I+PAPVQRRR  VQEPD+LEEV+QHV
Subjt:  ------------------LDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQHV

TYK01570.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.2e-1979.37Show/hide
Query:  RLNSSRFRDVADDPQQFLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQH
        R N+ R R+VADDPQQ L+ICN+NE+YMENIHYMYDVPIVPAPVQRRR  VQEPD+LEEV+QH
Subjt:  RLNSSRFRDVADDPQQFLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQH

TYK18891.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.2e-1979.37Show/hide
Query:  RLNSSRFRDVADDPQQFLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQH
        R N+ R R+VADDPQQ L+ICN+NE+YMENIHYMYDVPIVPAPVQRRR  VQEPD+LEEV+QH
Subjt:  RLNSSRFRDVADDPQQFLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQH

TrEMBL top hitse value%identityAlignment
A0A5A7U5S8 Mediator of RNA polymerase II transcription subunit 12-like isoform X15.9e-2079.37Show/hide
Query:  RLNSSRFRDVADDPQQFLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQH
        R N+ R R+VADDPQQ L+ICN+NE+YMENIHYMYDVPIVPAPVQRRR  VQEPD+LEEV+QH
Subjt:  RLNSSRFRDVADDPQQFLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQH

A0A5A7VIP6 Mediator of RNA polymerase II transcription subunit 12-like isoform X15.9e-2079.37Show/hide
Query:  RLNSSRFRDVADDPQQFLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQH
        R N+ R R+VADDPQQ L+ICN+NE+YMENIHYMYDVPIVPAPVQRRR  VQEPD+LEEV+QH
Subjt:  RLNSSRFRDVADDPQQFLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQH

A0A5D3BAB0 Serine/threonine-protein phosphatase 7 long form-like protein5.9e-2079.37Show/hide
Query:  RLNSSRFRDVADDPQQFLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQH
        R N+ R R+VADDPQQ L+ICN+NE+YMENIHYMYDVPIVPAPVQRRR  VQEPD+LEEV+QH
Subjt:  RLNSSRFRDVADDPQQFLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQH

A0A5D3D5R5 Mediator of RNA polymerase II transcription subunit 12-like isoform X15.9e-2079.37Show/hide
Query:  RLNSSRFRDVADDPQQFLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQH
        R N+ R R+VADDPQQ L+ICN+NE+YMENIHYMYDVPIVPAPVQRRR  VQEPD+LEEV+QH
Subjt:  RLNSSRFRDVADDPQQFLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQH

A0A5D3D6I1 Mediator of RNA polymerase II transcription subunit 12-like isoform X16.3e-2244.85Show/hide
Query:  GTCLIFFNLIRLSESRTKLSWIVCRISVRTVTTYGRRLNSS----------------------------------RFRDVADDPQQF-------------
        GTCLIFFNL+RLS SR KLS+I C ISVRTVTTYG RL  S                                  RF       +QF             
Subjt:  GTCLIFFNLIRLSESRTKLSWIVCRISVRTVTTYGRRLNSS----------------------------------RFRDVADDPQQF-------------

Query:  ------------------LDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQHV
                          L+ICN+NE+YMENIHYMYDV I+PAPVQRRR  VQEPD+LEEV+QHV
Subjt:  ------------------LDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQHV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCGAGGTACATGTTTGATCTTCTTCAACCTGATCAGATTATCTGAGAGCCGTACAAAGCTATCATGGATAGTTTGCCGAATTTCTGTACGAACGGTCACGACATA
TGGTAGACGGTTGAACAGTAGTAGATTTCGGGATGTTGCAGATGATCCACAGCAGTTCCTAGATATATGCAACAATAACGAGCGGTACATGGAGAACATACACTATATGT
ACGATGTACCTATTGTACCTGCACCAGTTCAAAGGAGACGTGCTCGAGTGCAAGAGCCTGATGAATTGGAAGAAGTTGAACAACATGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCGAGGTACATGTTTGATCTTCTTCAACCTGATCAGATTATCTGAGAGCCGTACAAAGCTATCATGGATAGTTTGCCGAATTTCTGTACGAACGGTCACGACATA
TGGTAGACGGTTGAACAGTAGTAGATTTCGGGATGTTGCAGATGATCCACAGCAGTTCCTAGATATATGCAACAATAACGAGCGGTACATGGAGAACATACACTATATGT
ACGATGTACCTATTGTACCTGCACCAGTTCAAAGGAGACGTGCTCGAGTGCAAGAGCCTGATGAATTGGAAGAAGTTGAACAACATGTGTAA
Protein sequenceShow/hide protein sequence
MVRGTCLIFFNLIRLSESRTKLSWIVCRISVRTVTTYGRRLNSSRFRDVADDPQQFLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQHV