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PI0003614 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003614
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr02:19370488..19370975
RNA-Seq ExpressionPI0003614
SyntenyPI0003614
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036771.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-4265.93Show/hide
Query:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPSGFEGFAHYDGNDIENPTMYSQGLDM
        MRG TCSGFGWNDE KCI+AEK++F++WVKSHLAAKGLLNK FP+YD+L YVF +DRAT G+AE+F DVGSN P+G+E FA     D++   MYSQGL+M
Subjt:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPSGFEGFAHYDGNDIENPTMYSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEAA
        SPD++M   + R+SE R  SSGSKRKRGGQA + A
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEAA

KAA0047075.1 retrotransposon protein [Cucumis melo var. makuwa]5.7e-4163.43Show/hide
Query:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPSGFEGFAHYDGNDIENPTMYSQGLDM
        MRG  CSGFGWNDE KCI+ EK+LF+ WVKSH  AKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN P+G++ FA     D     MYS GL+M
Subjt:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPSGFEGFAHYDGNDIENPTMYSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA
        SPDD+M  R+VR+SE R  SSGSKRKR G   ++
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-4262.69Show/hide
Query:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPSGFEGFAHYDGNDIENPTMYSQGLDM
        MRG TCSGFGWNDE KCI+AEK++F+ WV+SH AAKGLLNK FPHYD+L YVF +D ATGGRAE+F DVGSN P+G++ FA    +D +   MYS+GL+M
Subjt:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPSGFEGFAHYDGNDIENPTMYSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA
        SPD++M  R+ R+SE R  SSGSK+KRGG  +++
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]7.4e-4167.94Show/hide
Query:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVP-SGFEGFAHYDGNDIENPTMYSQGLD
        MRG  CSGFGWNDE KCIIAEK+LF++WV+SH AAKGLLNKPFP+YD+L YVFGRDRATG  AETF DVGSN P  G++ F   DGN+ + P +YSQG+D
Subjt:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVP-SGFEGFAHYDGNDIENPTMYSQGLD

Query:  MSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ
        +S DD+   R  R SE R GSSGSKRKRG Q
Subjt:  MSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ

TYK05082.1 retrotransposon protein [Cucumis melo var. makuwa]7.4e-4164.18Show/hide
Query:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPSGFEGFAHYDGNDIENPTMYSQGLDM
        MRG  CSGFGWNDE KCI+ EK+LF+ WVKSH AAKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN P G++  A     D + P MYS GL+M
Subjt:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPSGFEGFAHYDGNDIENPTMYSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA
        SPDD+M  R+ R+SE R  SSGSKRKR G A ++
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA

TrEMBL top hitse value%identityAlignment
A0A5A7T5D2 Retrotransposon protein1.5e-4265.93Show/hide
Query:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPSGFEGFAHYDGNDIENPTMYSQGLDM
        MRG TCSGFGWNDE KCI+AEK++F++WVKSHLAAKGLLNK FP+YD+L YVF +DRAT G+AE+F DVGSN P+G+E FA     D++   MYSQGL+M
Subjt:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPSGFEGFAHYDGNDIENPTMYSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEAA
        SPD++M   + R+SE R  SSGSKRKRGGQA + A
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEAA

A0A5A7TZA5 Retrotransposon protein1.5e-4262.69Show/hide
Query:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPSGFEGFAHYDGNDIENPTMYSQGLDM
        MRG TCSGFGWNDE KCI+AEK++F+ WV+SH AAKGLLNK FPHYD+L YVF +D ATGGRAE+F DVGSN P+G++ FA    +D +   MYS+GL+M
Subjt:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPSGFEGFAHYDGNDIENPTMYSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA
        SPD++M  R+ R+SE R  SSGSK+KRGG  +++
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA

A0A5A7U098 Retrotransposon protein2.7e-4163.43Show/hide
Query:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPSGFEGFAHYDGNDIENPTMYSQGLDM
        MRG  CSGFGWNDE KCI+ EK+LF+ WVKSH  AKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN P+G++ FA     D     MYS GL+M
Subjt:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPSGFEGFAHYDGNDIENPTMYSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA
        SPDD+M  R+VR+SE R  SSGSKRKR G   ++
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA

A0A5A7VES2 Retrotransposon protein3.6e-4167.94Show/hide
Query:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVP-SGFEGFAHYDGNDIENPTMYSQGLD
        MRG  CSGFGWNDE KCIIAEK+LF++WV+SH AAKGLLNKPFP+YD+L YVFGRDRATG  AETF DVGSN P  G++ F   DGN+ + P +YSQG+D
Subjt:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVP-SGFEGFAHYDGNDIENPTMYSQGLD

Query:  MSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ
        +S DD+   R  R SE R GSSGSKRKRG Q
Subjt:  MSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ

A0A5D3C1M0 Retrotransposon protein3.6e-4164.18Show/hide
Query:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPSGFEGFAHYDGNDIENPTMYSQGLDM
        MRG  CSGFGWNDE KCI+ EK+LF+ WVKSH AAKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN P G++  A     D + P MYS GL+M
Subjt:  MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPSGFEGFAHYDGNDIENPTMYSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA
        SPDD+M  R+ R+SE R  SSGSKRKR G A ++
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30140.1 unknown protein3.1e-0533.87Show/hide
Query:  SGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDD
        SGFGW+ E K   A  +++  ++K+H   K +  +   H++DL  +FG   ATG  A    D
Subjt:  SGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDD

AT2G24960.2 unknown protein2.2e-0629.63Show/hide
Query:  SGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATG
        +GF W+     +IA+ D++ +++++H  A+    K  P Y +LC++FG++ + G
Subjt:  SGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATG

AT4G02210.1 unknown protein2.8e-0631.91Show/hide
Query:  GFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFG
        GF W++E + + A+ ++++ ++K+H  A+  + +P P+Y DLC + G
Subjt:  GFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFG

AT4G02210.2 unknown protein2.8e-0631.91Show/hide
Query:  GFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFG
        GF W++E + + A+ ++++ ++K+H  A+  + +P P+Y DLC + G
Subjt:  GFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGCTCGACGTGTAGTGGGTTTGGTTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTTCGAAAGTTGGGTGAAGAGTCATCTAGCCGCAAAGGG
CCTCCTAAACAAACCCTTTCCCCACTACGACGACCTTTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCGACGATGTTGGGTCGAACGTGC
CTTCAGGCTTCGAAGGATTTGCCCACTACGATGGGAACGATATAGAGAACCCGACGATGTACAGTCAGGGCTTGGACATGTCACCTGACGACATAATGACTCCACGATCG
GTTCGTATGTCTGAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACGGGGAGGGCAGGCATTGGAGGCGGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGCTCGACGTGTAGTGGGTTTGGTTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTTCGAAAGTTGGGTGAAGAGTCATCTAGCCGCAAAGGG
CCTCCTAAACAAACCCTTTCCCCACTACGACGACCTTTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCGACGATGTTGGGTCGAACGTGC
CTTCAGGCTTCGAAGGATTTGCCCACTACGATGGGAACGATATAGAGAACCCGACGATGTACAGTCAGGGCTTGGACATGTCACCTGACGACATAATGACTCCACGATCG
GTTCGTATGTCTGAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACGGGGAGGGCAGGCATTGGAGGCGGCATAA
Protein sequenceShow/hide protein sequence
MRGSTCSGFGWNDELKCIIAEKDLFESWVKSHLAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPSGFEGFAHYDGNDIENPTMYSQGLDMSPDDIMTPRS
VRMSEARPGSSGSKRKRGGQALEAA