CuGenDBv2

Gene ID	PI0003661
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr10:5772969..5773421
RNA-Seq Expression	PI0003661
Synteny	PI0003661
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

2.8e-57

77.33

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YN RM EG SVREHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNEL
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

2.8e-57

77.33

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YN RM EG SVREHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNEL
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

2.8e-57

77.33

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YN RM EG SVREHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNEL
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

2.8e-57

77.33

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF
        +EECP  P  NA+QTVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YN RM EG SVREHVL++MV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNEL
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

2.8e-57

77.33

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YN RM EG SVREHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNEL
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.4e-57

77.33

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YN RM EG SVREHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNEL
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL

A0A5A7TU93 Gag/pol protein

1.4e-57

77.33

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YN RM EG SVREHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNEL
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL

A0A5A7TWB9 Gag/pol protein

1.4e-57

77.33

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YN RM EG SVREHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNEL
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL

A0A5A7V6N0 Gag/pol protein

1.4e-57

77.33

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF
        +EECP  P  NA+QTVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YN RM EG SVREHVL++MV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNEL
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL

A0A5D3CPJ6 Gag/pol protein

1.4e-57

77.33

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YN RM EG SVREHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNEL
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATGATCGCTGGATAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAG
TATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGG
CTATTAAATACGTTTATAATGTCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATT
GACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCT
TAACGAGTTGTAG

mRNA sequence

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Protein sequence

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MEECPPSPVRNASQTVRDAHDRWIKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNVRMKEGQSVREHVLDMMVQFNVAETNGAVI
DEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEL

PI0003661 (gene) of Melon (PI 482460) v1 genome