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PI0003703 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003703
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr05:9093608..9095066
RNA-Seq ExpressionPI0003703
SyntenyPI0003703
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.4e-6369.02Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPN+KCP ++E+ N++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILET-RSSEEKVTSTPILLENKDEKKEEKLETSTLPSTSKGKR
         EMKQQM+ LT AISK++GKG LPAQP++ANVSAISLRSGKIL+T  + E+KVTS  + L +K+E KEEK+ET+  PS SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILET-RSSEEKVTSTPILLENKDEKKEEKLETSTLPSTSKGKR

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.2e-6368.48Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPN+KCP ++E+ N++RKYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILET-RSSEEKVTSTPILLENKDEKKEEKLETSTLPSTSKGKR
         EMKQQM+ LT AISK++GKG L AQ N+ANVSA+SLRSGKIL+T  + E+K TS P+ L  K+E KEEK+ET+  P  SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILET-RSSEEKVTSTPILLENKDEKKEEKLETSTLPSTSKGKR

KAA0050529.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.2e-6368.48Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPN+KCP ++E+ N++RKYDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KAL T T+SFQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILETRSS-EEKVTSTPILLENKDEKKEEKLETSTLPSTSKGKR
         EMKQQM+ LT AISK++ KG LPAQP+HANVSAISLRSGKIL+T ++ E+KVTS P+   +K+E KEEK+ET+  PS SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILETRSS-EEKVTSTPILLENKDEKKEEKLETSTLPSTSKGKR

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.0e-6469.95Show/hide
Query:  TTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQN
        TTLLTSFVQG  +KV KCGVC LVGH N KCP ++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ 
Subjt:  TTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQN

Query:  EMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILET-RSSEEKVTSTPILLENKDEKKEEKLETSTLPSTSKGKR
        EMKQQM+ LT AISK++GKG LPAQ +HANVSAISLRSGKIL+T  + E+KVTS P+ L +K+E KEEK+ET+  PS SK  +
Subjt:  EMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILET-RSSEEKVTSTPILLENKDEKKEEKLETSTLPSTSKGKR

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.7e-6267.76Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVC LVGHPN+KCP ++E+ N++R+YDPHSNTYN+GWRDN NLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILET-RSSEEKVTSTPILLENKDEKKEEKLETSTLPSTSKGK
         +MKQQM+ LT AISK++GKG LPAQP+HANVSAISLRSGKIL+T  + E+K+TS P+ L +K+E KEEK+++    +T  G+
Subjt:  NEMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILET-RSSEEKVTSTPILLENKDEKKEEKLETSTLPSTSKGK

TrEMBL top hitse value%identityAlignment
A0A5A7UAL2 Retrotransposon gag protein1.6e-6368.48Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPN+KCP ++E+ N++RKYDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KAL T T+SFQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILETRSS-EEKVTSTPILLENKDEKKEEKLETSTLPSTSKGKR
         EMKQQM+ LT AISK++ KG LPAQP+HANVSAISLRSGKIL+T ++ E+KVTS P+   +K+E KEEK+ET+  PS SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILETRSS-EEKVTSTPILLENKDEKKEEKLETSTLPSTSKGKR

A0A5A7VQ60 Retrotransposon gag protein2.4e-6469.95Show/hide
Query:  TTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQN
        TTLLTSFVQG  +KV KCGVC LVGH N KCP ++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ 
Subjt:  TTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQN

Query:  EMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILET-RSSEEKVTSTPILLENKDEKKEEKLETSTLPSTSKGKR
        EMKQQM+ LT AISK++GKG LPAQ +HANVSAISLRSGKIL+T  + E+KVTS P+ L +K+E KEEK+ET+  PS SK  +
Subjt:  EMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILET-RSSEEKVTSTPILLENKDEKKEEKLETSTLPSTSKGKR

A0A5D3CB46 Retrotransposon gag protein2.3e-6267.76Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVC LVGHPN+KCP ++E+ N++R+YDPHSNTYN+GWRDN NLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILET-RSSEEKVTSTPILLENKDEKKEEKLETSTLPSTSKGK
         +MKQQM+ LT AISK++GKG LPAQP+HANVSAISLRSGKIL+T  + E+K+TS P+ L +K+E KEEK+++    +T  G+
Subjt:  NEMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILET-RSSEEKVTSTPILLENKDEKKEEKLETSTLPSTSKGK

A0A5D3CRR8 Retrotransposon gag protein1.6e-6368.48Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPN+KCP ++E+ N++RKYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILET-RSSEEKVTSTPILLENKDEKKEEKLETSTLPSTSKGKR
         EMKQQM+ LT AISK++GKG L AQ N+ANVSA+SLRSGKIL+T  + E+K TS P+ L  K+E KEEK+ET+  P  SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILET-RSSEEKVTSTPILLENKDEKKEEKLETSTLPSTSKGKR

E5GBZ4 Retrotransposon gag protein7.0e-6469.02Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPN+KCP ++E+ N++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILET-RSSEEKVTSTPILLENKDEKKEEKLETSTLPSTSKGKR
         EMKQQM+ LT AISK++GKG LPAQP++ANVSAISLRSGKIL+T  + E+KVTS  + L +K+E KEEK+ET+  PS SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGTLPAQPNHANVSAISLRSGKILET-RSSEEKVTSTPILLENKDEKKEEKLETSTLPSTSKGKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTATTAAAGTTGCTAAGTGCGGGGTATGCAGTCTAGTCGGACATCCTAATAACAAGTGTCCAAACTTAGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGCAAG
CAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATCTAGTTAAAGCTCTTGCTACTAATACCATCTCTTTTCAGAATGAAATGAAACAACAAATGTCTCATCTG
ACAAATGCCATAAGCAAGCTTGAAGGTAAAGGTACACTTCCGGCTCAGCCAAATCATGCTAATGTAAGTGCCATCTCGCTTAGAAGTGGTAAGATTCTGGAAACCCGTTC
AAGTGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTACTCTACCATCTACTTCTAAGGGAAAAAGGG
ATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTATTAAAGTTGCTAAGTGCGGGGTATGCAGTCTAGTCGGACATCCTAATAACAAGTGTCCAAACTTAGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGCAAG
CAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATCTAGTTAAAGCTCTTGCTACTAATACCATCTCTTTTCAGAATGAAATGAAACAACAAATGTCTCATCTG
ACAAATGCCATAAGCAAGCTTGAAGGTAAAGGTACACTTCCGGCTCAGCCAAATCATGCTAATGTAAGTGCCATCTCGCTTAGAAGTGGTAAGATTCTGGAAACCCGTTC
AAGTGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTACTCTACCATCTACTTCTAAGGGAAAAAGGG
ATTGA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGSIKVAKCGVCSLVGHPNNKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHL
TNAISKLEGKGTLPAQPNHANVSAISLRSGKILETRSSEEKVTSTPILLENKDEKKEEKLETSTLPSTSKGKRD